Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1917 and GFF1918 are separated by 2 nucleotides GFF1918 and GFF1919 are separated by 42 nucleotides GFF1919 and GFF1920 are separated by 50 nucleotides
GFF1917 - Nitrate/nitrite binding protein NrtA, at 576,295 to 577,422
GFF1917
GFF1918 - GTPase Der, at 577,425 to 578,813
GFF1918
GFF1919 - hypothetical protein, at 578,856 to 579,116
GFF1919
GFF1920 - hypothetical protein, at 579,167 to 579,856
GFF1920
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.583 kb on + strand, within GFF1917 at 576.614 kb on + strand, within GFF1917 at 576.615 kb on - strand, within GFF1917 at 576.615 kb on - strand, within GFF1917 at 576.706 kb on + strand, within GFF1917 at 576.706 kb on + strand, within GFF1917 at 576.707 kb on - strand, within GFF1917 at 576.727 kb on + strand, within GFF1917 at 576.727 kb on + strand, within GFF1917 at 576.727 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.235 kb on - strand, within GFF1917 at 577.235 kb on - strand, within GFF1917 at 577.235 kb on - strand, within GFF1917 at 577.304 kb on - strand, within GFF1917 at 577.304 kb on - strand, within GFF1917 at 577.304 kb on - strand, within GFF1917 at 578.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 576,583 + GFF1917 0.26 -0.2 576,614 + GFF1917 0.28 -0.2 576,615 - GFF1917 0.28 +0.3 576,615 - GFF1917 0.28 -0.5 576,706 + GFF1917 0.36 -1.6 576,706 + GFF1917 0.36 +1.0 576,707 - GFF1917 0.37 -0.4 576,727 + GFF1917 0.38 -0.2 576,727 + GFF1917 0.38 -0.6 576,727 + GFF1917 0.38 +2.7 577,234 + GFF1917 0.83 -1.5 577,234 + GFF1917 0.83 -0.1 577,234 + GFF1917 0.83 +1.1 577,234 + GFF1917 0.83 -0.9 577,235 - GFF1917 0.83 +0.0 577,235 - GFF1917 0.83 -0.7 577,235 - GFF1917 0.83 +0.3 577,304 - GFF1917 0.89 -1.7 577,304 - GFF1917 0.89 -1.8 577,304 - GFF1917 0.89 +0.6 578,858 - +0.8
Or see this region's nucleotide sequence