Strain Fitness in Xanthobacter sp. DMC5 around GFF1914

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1912 and GFF1913 are separated by 48 nucleotidesGFF1913 and GFF1914 are separated by 104 nucleotidesGFF1914 and GFF1915 are separated by 55 nucleotides GFF1912 - Ribosome maturation factor RimM, at 572,639 to 573,193 GFF1912 GFF1913 - tRNA (guanine-N(1)-)-methyltransferase, at 573,242 to 573,955 GFF1913 GFF1914 - 50S ribosomal protein L19, at 574,060 to 574,482 GFF1914 GFF1915 - hypothetical protein, at 574,538 to 575,452 GFF1915 Position (kb) 574 575Strain fitness (log2 ratio) -1 0 1at 573.181 kb on + strandat 573.181 kb on + strandat 573.181 kb on + strandat 573.975 kb on + strandat 574.540 kb on - strandat 574.893 kb on + strand, within GFF1915

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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573,181 + -0.0
573,181 + -0.4
573,181 + -0.0
573,975 + +1.5
574,540 - +0.5
574,893 + GFF1915 0.39 +0.4

Or see this region's nucleotide sequence