Strain Fitness in Xanthobacter sp. DMC5 around GFF1911

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1910 and GFF1911 are separated by 122 nucleotidesGFF1911 and GFF1912 are separated by 178 nucleotidesGFF1912 and GFF1913 are separated by 48 nucleotides GFF1910 - putative sulfoacetate transporter SauU, at 569,681 to 570,889 GFF1910 GFF1911 - putative FAD-linked oxidoreductase, at 571,012 to 572,460 GFF1911 GFF1912 - Ribosome maturation factor RimM, at 572,639 to 573,193 GFF1912 GFF1913 - tRNA (guanine-N(1)-)-methyltransferase, at 573,242 to 573,955 GFF1913 Position (kb) 571 572 573Strain fitness (log2 ratio) -1 0 1at 570.041 kb on + strand, within GFF1910at 570.157 kb on - strand, within GFF1910at 570.362 kb on + strand, within GFF1910at 570.363 kb on - strand, within GFF1910at 570.363 kb on - strand, within GFF1910at 570.738 kb on - strand, within GFF1910at 570.870 kb on + strandat 570.887 kb on + strandat 572.578 kb on - strandat 572.584 kb on + strandat 573.181 kb on + strandat 573.181 kb on + strandat 573.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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570,041 + GFF1910 0.30 +0.4
570,157 - GFF1910 0.39 +0.5
570,362 + GFF1910 0.56 -0.9
570,363 - GFF1910 0.56 +0.4
570,363 - GFF1910 0.56 -1.3
570,738 - GFF1910 0.87 -0.7
570,870 + -1.0
570,887 + -0.2
572,578 - -0.3
572,584 + +0.3
573,181 + -0.0
573,181 + -0.4
573,181 + -0.0

Or see this region's nucleotide sequence