Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1904 and GFF1905 overlap by 1 nucleotides GFF1905 and GFF1906 overlap by 4 nucleotides GFF1906 and GFF1907 are separated by 209 nucleotides
GFF1904 - hypothetical protein, at 561,848 to 562,921
GFF1904
GFF1905 - sugar efflux transporter, at 562,921 to 564,906
GFF1905
GFF1906 - hypothetical protein, at 564,903 to 565,571
GFF1906
GFF1907 - hypothetical protein, at 565,781 to 566,527
GFF1907
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -1
0
1
2 at 562.030 kb on - strand, within GFF1904 at 562.033 kb on - strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.285 kb on + strand, within GFF1904 at 562.286 kb on - strand, within GFF1904 at 562.345 kb on - strand, within GFF1904 at 562.374 kb on + strand, within GFF1904 at 562.374 kb on + strand, within GFF1904 at 562.374 kb on + strand, within GFF1904 at 562.375 kb on - strand, within GFF1904 at 562.375 kb on - strand, within GFF1904 at 562.375 kb on - strand, within GFF1904 at 562.499 kb on + strand, within GFF1904 at 562.546 kb on - strand, within GFF1904 at 562.581 kb on + strand, within GFF1904 at 562.581 kb on + strand, within GFF1904 at 562.585 kb on + strand, within GFF1904 at 562.585 kb on + strand, within GFF1904 at 562.587 kb on + strand, within GFF1904 at 562.587 kb on + strand, within GFF1904 at 562.588 kb on - strand, within GFF1904 at 562.588 kb on - strand, within GFF1904 at 562.588 kb on - strand, within GFF1904 at 562.704 kb on + strand, within GFF1904 at 562.705 kb on - strand, within GFF1904 at 562.733 kb on - strand, within GFF1904 at 563.005 kb on + strand at 563.826 kb on - strand, within GFF1905 at 563.867 kb on + strand, within GFF1905 at 563.867 kb on + strand, within GFF1905 at 563.868 kb on - strand, within GFF1905 at 563.894 kb on + strand, within GFF1905 at 563.894 kb on + strand, within GFF1905 at 563.895 kb on - strand, within GFF1905 at 564.663 kb on + strand, within GFF1905 at 565.165 kb on + strand, within GFF1906 at 565.165 kb on + strand, within GFF1906 at 565.166 kb on - strand, within GFF1906 at 565.166 kb on - strand, within GFF1906 at 565.201 kb on + strand, within GFF1906 at 565.248 kb on - strand, within GFF1906 at 565.279 kb on + strand, within GFF1906 at 565.280 kb on - strand, within GFF1906 at 565.280 kb on - strand, within GFF1906 at 565.476 kb on + strand, within GFF1906 at 565.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 562,030 - GFF1904 0.17 +1.7 562,033 - GFF1904 0.17 +2.0 562,170 + GFF1904 0.30 -0.7 562,170 + GFF1904 0.30 -0.4 562,170 + GFF1904 0.30 +0.6 562,170 + GFF1904 0.30 +0.6 562,285 + GFF1904 0.41 +0.6 562,286 - GFF1904 0.41 +0.3 562,345 - GFF1904 0.46 +1.0 562,374 + GFF1904 0.49 +0.4 562,374 + GFF1904 0.49 +0.0 562,374 + GFF1904 0.49 +0.9 562,375 - GFF1904 0.49 +1.1 562,375 - GFF1904 0.49 -0.1 562,375 - GFF1904 0.49 +1.2 562,499 + GFF1904 0.61 +1.2 562,546 - GFF1904 0.65 +1.5 562,581 + GFF1904 0.68 +0.2 562,581 + GFF1904 0.68 -0.3 562,585 + GFF1904 0.69 +0.6 562,585 + GFF1904 0.69 +1.4 562,587 + GFF1904 0.69 +1.2 562,587 + GFF1904 0.69 +2.7 562,588 - GFF1904 0.69 +0.9 562,588 - GFF1904 0.69 -0.4 562,588 - GFF1904 0.69 +1.4 562,704 + GFF1904 0.80 +0.7 562,705 - GFF1904 0.80 +1.4 562,733 - GFF1904 0.82 +0.8 563,005 + +0.2 563,826 - GFF1905 0.46 -0.5 563,867 + GFF1905 0.48 +0.1 563,867 + GFF1905 0.48 -0.1 563,868 - GFF1905 0.48 +0.2 563,894 + GFF1905 0.49 +0.4 563,894 + GFF1905 0.49 -0.4 563,895 - GFF1905 0.49 -0.7 564,663 + GFF1905 0.88 +0.5 565,165 + GFF1906 0.39 -0.0 565,165 + GFF1906 0.39 +1.2 565,166 - GFF1906 0.39 -0.9 565,166 - GFF1906 0.39 +0.1 565,201 + GFF1906 0.45 +0.1 565,248 - GFF1906 0.52 -0.2 565,279 + GFF1906 0.56 +1.1 565,280 - GFF1906 0.56 +0.7 565,280 - GFF1906 0.56 -0.2 565,476 + GFF1906 0.86 -0.6 565,634 - -0.2
Or see this region's nucleotide sequence