Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1900 and GFF1901 are separated by 125 nucleotides GFF1901 and GFF1902 are separated by 11 nucleotides GFF1902 and GFF1903 are separated by 116 nucleotides GFF1903 and GFF1904 overlap by 1 nucleotides
GFF1900 - hypothetical protein, at 558,477 to 560,126
GFF1900
GFF1901 - Serine/threonine-protein kinase BtrW, at 560,252 to 560,695
GFF1901
GFF1902 - hypothetical protein, at 560,707 to 561,057
GFF1902
GFF1903 - hypothetical protein, at 561,174 to 561,848
GFF1903
GFF1904 - hypothetical protein, at 561,848 to 562,921
GFF1904
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 559.798 kb on + strand, within GFF1900 at 559.798 kb on + strand, within GFF1900 at 559.799 kb on - strand, within GFF1900 at 559.799 kb on - strand, within GFF1900 at 561.067 kb on - strand at 561.108 kb on - strand at 561.120 kb on - strand at 561.120 kb on - strand at 561.120 kb on - strand at 561.197 kb on - strand at 561.197 kb on - strand at 561.346 kb on + strand, within GFF1903 at 561.356 kb on - strand, within GFF1903 at 561.356 kb on - strand, within GFF1903 at 561.382 kb on + strand, within GFF1903 at 561.520 kb on + strand, within GFF1903 at 561.632 kb on - strand, within GFF1903 at 561.656 kb on - strand, within GFF1903 at 561.656 kb on - strand, within GFF1903 at 561.700 kb on + strand, within GFF1903 at 561.700 kb on + strand, within GFF1903 at 561.857 kb on + strand at 561.857 kb on + strand at 561.858 kb on - strand at 562.030 kb on - strand, within GFF1904 at 562.033 kb on - strand, within GFF1904
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 559,798 + GFF1900 0.80 -0.8 559,798 + GFF1900 0.80 -0.8 559,799 - GFF1900 0.80 -1.5 559,799 - GFF1900 0.80 -0.6 561,067 - +1.0 561,108 - +0.8 561,120 - -0.5 561,120 - +0.2 561,120 - +1.7 561,197 - +0.1 561,197 - -0.4 561,346 + GFF1903 0.25 -1.7 561,356 - GFF1903 0.27 +0.8 561,356 - GFF1903 0.27 -0.2 561,382 + GFF1903 0.31 -0.8 561,520 + GFF1903 0.51 -0.4 561,632 - GFF1903 0.68 +0.0 561,656 - GFF1903 0.71 +0.2 561,656 - GFF1903 0.71 -0.8 561,700 + GFF1903 0.78 -0.6 561,700 + GFF1903 0.78 -3.1 561,857 + +1.0 561,857 + +0.9 561,858 - +0.5 562,030 - GFF1904 0.17 +1.7 562,033 - GFF1904 0.17 +2.0
Or see this region's nucleotide sequence