Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1891 and GFF1892 overlap by 4 nucleotides GFF1892 and GFF1893 overlap by 1 nucleotides GFF1893 and GFF1894 are separated by 133 nucleotides
GFF1891 - hypothetical protein, at 551,126 to 552,346
GFF1891
GFF1892 - dITP/XTP pyrophosphatase, at 552,343 to 552,975
GFF1892
GFF1893 - Ribonuclease PH, at 552,975 to 553,712
GFF1893
GFF1894 - Heat-inducible transcription repressor HrcA, at 553,846 to 554,946
GFF1894
Position (kb) 552
553
554 Strain fitness (log2 ratio) -1
0
1
2 at 552.070 kb on + strand, within GFF1891 at 552.157 kb on - strand, within GFF1891 at 552.157 kb on - strand, within GFF1891 at 552.243 kb on + strand at 552.243 kb on + strand at 553.190 kb on - strand, within GFF1893 at 553.501 kb on + strand, within GFF1893 at 553.502 kb on - strand, within GFF1893 at 553.696 kb on - strand at 553.726 kb on - strand at 553.808 kb on + strand at 553.808 kb on + strand at 553.809 kb on - strand at 553.939 kb on + strand at 554.056 kb on + strand, within GFF1894 at 554.056 kb on + strand, within GFF1894 at 554.056 kb on + strand, within GFF1894 at 554.057 kb on - strand, within GFF1894 at 554.235 kb on - strand, within GFF1894
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 552,070 + GFF1891 0.77 +0.7 552,157 - GFF1891 0.84 -0.6 552,157 - GFF1891 0.84 -0.4 552,243 + -0.8 552,243 + +1.7 553,190 - GFF1893 0.29 -0.2 553,501 + GFF1893 0.71 +0.4 553,502 - GFF1893 0.71 +0.5 553,696 - -1.1 553,726 - +0.0 553,808 + -0.6 553,808 + +1.2 553,809 - +0.7 553,939 + +0.1 554,056 + GFF1894 0.19 -0.3 554,056 + GFF1894 0.19 +0.8 554,056 + GFF1894 0.19 +0.0 554,057 - GFF1894 0.19 +2.5 554,235 - GFF1894 0.35 +1.9
Or see this region's nucleotide sequence