Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1886 and GFF1887 are separated by 112 nucleotides GFF1887 and GFF1888 are separated by 72 nucleotides GFF1888 and GFF1889 are separated by 5 nucleotides GFF1889 and GFF1890 are separated by 138 nucleotides
GFF1886 - hypothetical protein, at 548,303 to 548,911
GFF1886
GFF1887 - hypothetical protein, at 549,024 to 549,251
GFF1887
GFF1888 - hypothetical protein, at 549,324 to 549,644
GFF1888
GFF1889 - Integration host factor subunit beta, at 549,650 to 549,934
GFF1889
GFF1890 - hypothetical protein, at 550,073 to 551,038
GFF1890
Position (kb) 549
550 Strain fitness (log2 ratio) -1
0
1 at 549.316 kb on + strand at 550.254 kb on - strand, within GFF1890 at 550.343 kb on + strand, within GFF1890 at 550.344 kb on - strand, within GFF1890 at 550.443 kb on + strand, within GFF1890 at 550.443 kb on + strand, within GFF1890 at 550.444 kb on - strand, within GFF1890 at 550.444 kb on - strand, within GFF1890 at 550.498 kb on + strand, within GFF1890 at 550.500 kb on + strand, within GFF1890 at 550.500 kb on + strand, within GFF1890 at 550.501 kb on - strand, within GFF1890 at 550.593 kb on + strand, within GFF1890 at 550.593 kb on + strand, within GFF1890 at 550.665 kb on + strand, within GFF1890 at 550.692 kb on - strand, within GFF1890 at 550.694 kb on + strand, within GFF1890 at 550.694 kb on + strand, within GFF1890
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 549,316 + +0.4 550,254 - GFF1890 0.19 +0.6 550,343 + GFF1890 0.28 +0.5 550,344 - GFF1890 0.28 -0.3 550,443 + GFF1890 0.38 -0.5 550,443 + GFF1890 0.38 -0.4 550,444 - GFF1890 0.38 -0.8 550,444 - GFF1890 0.38 -1.5 550,498 + GFF1890 0.44 +0.8 550,500 + GFF1890 0.44 -1.2 550,500 + GFF1890 0.44 +0.2 550,501 - GFF1890 0.44 -0.2 550,593 + GFF1890 0.54 -0.6 550,593 + GFF1890 0.54 +0.5 550,665 + GFF1890 0.61 +0.5 550,692 - GFF1890 0.64 -0.0 550,694 + GFF1890 0.64 -1.1 550,694 + GFF1890 0.64 -1.2
Or see this region's nucleotide sequence