Strain Fitness in Xanthobacter sp. DMC5 around GFF1886

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1885 and GFF1886 are separated by 24 nucleotidesGFF1886 and GFF1887 are separated by 112 nucleotidesGFF1887 and GFF1888 are separated by 72 nucleotidesGFF1888 and GFF1889 are separated by 5 nucleotides GFF1885 - hypothetical protein, at 547,316 to 548,278 GFF1885 GFF1886 - hypothetical protein, at 548,303 to 548,911 GFF1886 GFF1887 - hypothetical protein, at 549,024 to 549,251 GFF1887 GFF1888 - hypothetical protein, at 549,324 to 549,644 GFF1888 GFF1889 - Integration host factor subunit beta, at 549,650 to 549,934 GFF1889 Position (kb) 548 549Strain fitness (log2 ratio) -1 0 1at 547.830 kb on - strand, within GFF1885at 547.947 kb on - strand, within GFF1885at 548.180 kb on - strand, within GFF1885at 548.235 kb on - strandat 548.247 kb on - strandat 548.273 kb on + strandat 549.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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547,830 - GFF1885 0.53 -1.2
547,947 - GFF1885 0.66 +0.4
548,180 - GFF1885 0.90 +0.4
548,235 - -0.2
548,247 - +0.2
548,273 + -0.1
549,316 + +0.4

Or see this region's nucleotide sequence