Strain Fitness in Xanthobacter sp. DMC5 around GFF1875

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1874 and GFF1875 are separated by 426 nucleotidesGFF1875 and GFF1876 are separated by 470 nucleotides GFF1874 - putative oxidoreductase YciK, at 535,547 to 536,290 GFF1874 GFF1875 - Lysine--tRNA ligase, at 536,717 to 538,393 GFF1875 GFF1876 - Aminomethyltransferase, at 538,864 to 540,030 GFF1876 Position (kb) 536 537 538 539Strain fitness (log2 ratio) -1 0 1at 536.288 kb on + strandat 536.289 kb on - strandat 538.504 kb on + strandat 538.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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536,288 + +0.5
536,289 - -0.0
538,504 + -0.5
538,809 + +0.4

Or see this region's nucleotide sequence