Strain Fitness in Xanthobacter sp. DMC5 around GFF1860

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1858 and GFF1859 overlap by 16 nucleotidesGFF1859 and GFF1860 are separated by 86 nucleotidesGFF1860 and GFF1861 are separated by 81 nucleotides GFF1858 - hypothetical protein, at 521,334 to 521,942 GFF1858 GFF1859 - hypothetical protein, at 521,927 to 522,439 GFF1859 GFF1860 - hypothetical protein, at 522,526 to 522,630 GFF1860 GFF1861 - hypothetical protein, at 522,712 to 524,034 GFF1861 Position (kb) 522 523Strain fitness (log2 ratio) -1 0 1at 521.534 kb on - strand, within GFF1858at 522.105 kb on + strand, within GFF1859at 522.473 kb on + strandat 522.545 kb on + strand, within GFF1860at 522.546 kb on - strand, within GFF1860at 522.663 kb on + strandat 522.663 kb on + strandat 522.664 kb on - strandat 522.664 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
521,534 - GFF1858 0.33 +0.2
522,105 + GFF1859 0.35 +0.5
522,473 + -0.5
522,545 + GFF1860 0.18 -0.8
522,546 - GFF1860 0.19 +1.3
522,663 + +0.0
522,663 + -0.5
522,664 - -1.0
522,664 - +0.3

Or see this region's nucleotide sequence