Strain Fitness in Xanthobacter sp. DMC5 around GFF1855

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1854 and GFF1855 are separated by 281 nucleotidesGFF1855 and GFF1856 are separated by 357 nucleotides GFF1854 - Gamma-glutamylputrescine oxidoreductase, at 515,193 to 516,497 GFF1854 GFF1855 - hypothetical protein, at 516,779 to 517,360 GFF1855 GFF1856 - hypothetical protein, at 517,718 to 520,645 GFF1856 Position (kb) 516 517 518Strain fitness (log2 ratio) -1 0 1at 515.955 kb on + strand, within GFF1854at 515.955 kb on + strand, within GFF1854at 516.367 kb on + strandat 516.637 kb on + strandat 516.637 kb on + strandat 516.638 kb on - strandat 516.741 kb on - strandat 516.798 kb on - strandat 516.854 kb on + strand, within GFF1855at 516.854 kb on + strand, within GFF1855at 516.855 kb on - strand, within GFF1855at 517.035 kb on - strand, within GFF1855at 517.035 kb on - strand, within GFF1855at 517.274 kb on + strand, within GFF1855at 517.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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515,955 + GFF1854 0.58 +0.8
515,955 + GFF1854 0.58 +0.5
516,367 + -0.6
516,637 + -0.2
516,637 + -0.1
516,638 - -0.9
516,741 - -0.8
516,798 - -0.8
516,854 + GFF1855 0.13 +0.1
516,854 + GFF1855 0.13 +0.8
516,855 - GFF1855 0.13 +1.1
517,035 - GFF1855 0.44 +0.8
517,035 - GFF1855 0.44 +0.3
517,274 + GFF1855 0.85 -0.2
517,490 + -0.7

Or see this region's nucleotide sequence