Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1843 and GFF1844 are separated by 43 nucleotides GFF1844 and GFF1845 overlap by 4 nucleotides GFF1845 and GFF1846 are separated by 115 nucleotides
GFF1843 - 3-isopropylmalate dehydratase small subunit 1, at 503,760 to 504,365
GFF1843
GFF1844 - Protein-glutamate methylesterase/protein-glutamine glutaminase 1, at 504,409 to 505,065
GFF1844
GFF1845 - Regulator of RpoS, at 505,062 to 506,084
GFF1845
GFF1846 - hypothetical protein, at 506,200 to 507,129
GFF1846
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 504.328 kb on - strand at 504.328 kb on - strand at 504.698 kb on + strand, within GFF1844 at 504.698 kb on + strand, within GFF1844 at 504.699 kb on - strand, within GFF1844 at 504.746 kb on + strand, within GFF1844 at 504.747 kb on - strand, within GFF1844 at 504.751 kb on + strand, within GFF1844 at 504.752 kb on - strand, within GFF1844 at 504.878 kb on + strand, within GFF1844 at 504.879 kb on - strand, within GFF1844 at 504.925 kb on - strand, within GFF1844 at 505.161 kb on + strand at 505.359 kb on + strand, within GFF1845 at 505.380 kb on + strand, within GFF1845 at 505.381 kb on - strand, within GFF1845 at 505.381 kb on - strand, within GFF1845 at 505.381 kb on - strand, within GFF1845 at 505.665 kb on + strand, within GFF1845 at 505.665 kb on + strand, within GFF1845 at 505.666 kb on - strand, within GFF1845 at 505.666 kb on - strand, within GFF1845 at 505.666 kb on - strand, within GFF1845 at 505.666 kb on - strand, within GFF1845 at 505.666 kb on - strand, within GFF1845 at 505.668 kb on - strand, within GFF1845 at 505.890 kb on + strand, within GFF1845 at 505.890 kb on + strand, within GFF1845 at 505.891 kb on - strand, within GFF1845 at 505.893 kb on - strand, within GFF1845 at 505.903 kb on - strand, within GFF1845 at 505.917 kb on + strand, within GFF1845 at 505.918 kb on - strand, within GFF1845 at 505.919 kb on + strand, within GFF1845 at 505.957 kb on - strand, within GFF1845 at 506.013 kb on + strand at 506.106 kb on - strand at 506.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 504,328 - -2.1 504,328 - -1.4 504,698 + GFF1844 0.44 -0.3 504,698 + GFF1844 0.44 -0.8 504,699 - GFF1844 0.44 -0.2 504,746 + GFF1844 0.51 -0.3 504,747 - GFF1844 0.51 +0.5 504,751 + GFF1844 0.52 -0.5 504,752 - GFF1844 0.52 -0.3 504,878 + GFF1844 0.71 -1.6 504,879 - GFF1844 0.72 -1.0 504,925 - GFF1844 0.79 +0.3 505,161 + -0.2 505,359 + GFF1845 0.29 -0.1 505,380 + GFF1845 0.31 -0.0 505,381 - GFF1845 0.31 +0.5 505,381 - GFF1845 0.31 -0.5 505,381 - GFF1845 0.31 +0.2 505,665 + GFF1845 0.59 +2.9 505,665 + GFF1845 0.59 -0.8 505,666 - GFF1845 0.59 +0.7 505,666 - GFF1845 0.59 -0.2 505,666 - GFF1845 0.59 +0.7 505,666 - GFF1845 0.59 +0.2 505,666 - GFF1845 0.59 +0.8 505,668 - GFF1845 0.59 -0.5 505,890 + GFF1845 0.81 +0.2 505,890 + GFF1845 0.81 +0.4 505,891 - GFF1845 0.81 +0.2 505,893 - GFF1845 0.81 -0.8 505,903 - GFF1845 0.82 +1.4 505,917 + GFF1845 0.84 +0.7 505,918 - GFF1845 0.84 -0.3 505,919 + GFF1845 0.84 +0.4 505,957 - GFF1845 0.87 +1.0 506,013 + +0.1 506,106 - +2.0 506,140 + +0.5
Or see this region's nucleotide sequence