Strain Fitness in Xanthobacter sp. DMC5 around GFF1838

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1837 and GFF1838 are separated by 100 nucleotidesGFF1838 and GFF1839 are separated by 169 nucleotides GFF1837 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 496,651 to 497,778 GFF1837 GFF1838 - putative peptidoglycan glycosyltransferase FtsW, at 497,879 to 499,090 GFF1838 GFF1839 - ATP-dependent RNA helicase SrmB, at 499,260 to 501,863 GFF1839 Position (kb) 497 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1at 499.204 kb on - strandat 499.581 kb on + strand, within GFF1839at 499.581 kb on + strand, within GFF1839at 499.581 kb on + strand, within GFF1839at 499.581 kb on + strand, within GFF1839at 499.581 kb on + strand, within GFF1839at 499.581 kb on + strand, within GFF1839at 499.582 kb on - strand, within GFF1839at 499.583 kb on + strand, within GFF1839at 499.583 kb on + strand, within GFF1839at 499.583 kb on + strand, within GFF1839at 499.584 kb on - strand, within GFF1839at 500.044 kb on - strand, within GFF1839

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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499,204 - -0.5
499,581 + GFF1839 0.12 -2.8
499,581 + GFF1839 0.12 +0.8
499,581 + GFF1839 0.12 +1.0
499,581 + GFF1839 0.12 -0.2
499,581 + GFF1839 0.12 -0.3
499,581 + GFF1839 0.12 +0.8
499,582 - GFF1839 0.12 +1.0
499,583 + GFF1839 0.12 +0.3
499,583 + GFF1839 0.12 +1.5
499,583 + GFF1839 0.12 -0.8
499,584 - GFF1839 0.12 -0.2
500,044 - GFF1839 0.30 -1.9

Or see this region's nucleotide sequence