Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1827 and GFF1828 are separated by 8 nucleotides GFF1828 and GFF1829 are separated by 78 nucleotides GFF1829 and GFF1830 are separated by 116 nucleotides GFF1830 and GFF1831 are separated by 97 nucleotides
GFF1827 - Disulfide bond formation protein B, at 486,697 to 487,290
GFF1827
GFF1828 - hypothetical protein, at 487,299 to 487,454
GFF1828
GFF1829 - Catechol-2,3-dioxygenase, at 487,533 to 488,438
GFF1829
GFF1830 - hypothetical protein, at 488,555 to 489,166
GFF1830
GFF1831 - Ethylmalonyl-CoA mutase, at 489,264 to 491,237
GFF1831
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1 at 486.549 kb on + strand at 486.550 kb on - strand at 486.962 kb on + strand, within GFF1827 at 486.962 kb on + strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 487.079 kb on + strand, within GFF1827 at 487.080 kb on - strand, within GFF1827 at 487.460 kb on - strand at 487.460 kb on - strand at 487.460 kb on - strand at 487.512 kb on + strand at 487.513 kb on - strand at 487.760 kb on - strand, within GFF1829 at 487.939 kb on - strand, within GFF1829 at 488.014 kb on + strand, within GFF1829 at 488.015 kb on - strand, within GFF1829 at 488.050 kb on + strand, within GFF1829 at 488.050 kb on + strand, within GFF1829 at 488.051 kb on - strand, within GFF1829 at 488.500 kb on - strand at 488.659 kb on - strand, within GFF1830 at 488.859 kb on + strand, within GFF1830 at 488.860 kb on - strand, within GFF1830 at 488.860 kb on - strand, within GFF1830 at 488.921 kb on - strand, within GFF1830 at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 486,549 + +0.6 486,550 - -0.2 486,962 + GFF1827 0.45 +0.1 486,962 + GFF1827 0.45 -1.5 486,963 - GFF1827 0.45 -0.1 486,963 - GFF1827 0.45 +0.6 486,963 - GFF1827 0.45 +1.3 487,079 + GFF1827 0.64 +0.6 487,080 - GFF1827 0.64 +0.1 487,460 - +0.4 487,460 - +0.3 487,460 - +0.1 487,512 + +0.4 487,513 - +0.4 487,760 - GFF1829 0.25 +0.8 487,939 - GFF1829 0.45 -0.1 488,014 + GFF1829 0.53 -0.3 488,015 - GFF1829 0.53 -0.5 488,050 + GFF1829 0.57 -0.6 488,050 + GFF1829 0.57 +0.4 488,051 - GFF1829 0.57 -2.1 488,500 - +0.1 488,659 - GFF1830 0.17 +0.6 488,859 + GFF1830 0.50 -0.1 488,860 - GFF1830 0.50 -0.3 488,860 - GFF1830 0.50 +0.6 488,921 - GFF1830 0.60 -0.6 489,209 + -0.3 489,209 + +0.1 489,209 + -1.7 489,209 + +0.8 489,209 + -0.6 489,209 + -2.2 489,209 + -0.1
Or see this region's nucleotide sequence