Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1826 and GFF1827 are separated by 222 nucleotides GFF1827 and GFF1828 are separated by 8 nucleotides GFF1828 and GFF1829 are separated by 78 nucleotides
GFF1826 - hypothetical protein, at 485,542 to 486,474
GFF1826
GFF1827 - Disulfide bond formation protein B, at 486,697 to 487,290
GFF1827
GFF1828 - hypothetical protein, at 487,299 to 487,454
GFF1828
GFF1829 - Catechol-2,3-dioxygenase, at 487,533 to 488,438
GFF1829
Position (kb) 487
488 Strain fitness (log2 ratio) -2
-1
0
1 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.366 kb on - strand, within GFF1826 at 486.422 kb on + strand at 486.422 kb on + strand at 486.423 kb on - strand at 486.434 kb on + strand at 486.435 kb on - strand at 486.549 kb on + strand at 486.550 kb on - strand at 486.962 kb on + strand, within GFF1827 at 486.962 kb on + strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 487.079 kb on + strand, within GFF1827 at 487.080 kb on - strand, within GFF1827 at 487.460 kb on - strand at 487.460 kb on - strand at 487.460 kb on - strand at 487.512 kb on + strand at 487.513 kb on - strand at 487.760 kb on - strand, within GFF1829 at 487.939 kb on - strand, within GFF1829 at 488.014 kb on + strand, within GFF1829 at 488.015 kb on - strand, within GFF1829 at 488.050 kb on + strand, within GFF1829 at 488.050 kb on + strand, within GFF1829 at 488.051 kb on - strand, within GFF1829
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 486,365 + GFF1826 0.88 +0.7 486,365 + GFF1826 0.88 +1.1 486,365 + GFF1826 0.88 +0.7 486,365 + GFF1826 0.88 +1.0 486,366 - GFF1826 0.88 +0.7 486,422 + +0.1 486,422 + -2.0 486,423 - -0.4 486,434 + -0.3 486,435 - -0.3 486,549 + +0.6 486,550 - -0.2 486,962 + GFF1827 0.45 +0.1 486,962 + GFF1827 0.45 -1.5 486,963 - GFF1827 0.45 -0.1 486,963 - GFF1827 0.45 +0.6 486,963 - GFF1827 0.45 +1.3 487,079 + GFF1827 0.64 +0.6 487,080 - GFF1827 0.64 +0.1 487,460 - +0.4 487,460 - +0.3 487,460 - +0.1 487,512 + +0.4 487,513 - +0.4 487,760 - GFF1829 0.25 +0.8 487,939 - GFF1829 0.45 -0.1 488,014 + GFF1829 0.53 -0.3 488,015 - GFF1829 0.53 -0.5 488,050 + GFF1829 0.57 -0.6 488,050 + GFF1829 0.57 +0.4 488,051 - GFF1829 0.57 -2.1
Or see this region's nucleotide sequence