Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1822 and GFF1823 are separated by 385 nucleotides GFF1823 and GFF1824 are separated by 5 nucleotides GFF1824 and GFF1825 overlap by 4 nucleotides
GFF1822 - hypothetical protein, at 478,301 to 479,818
GFF1822
GFF1823 - hypothetical protein, at 480,204 to 480,920
GFF1823
GFF1824 - hypothetical protein, at 480,926 to 481,831
GFF1824
GFF1825 - Sensor histidine kinase RcsC, at 481,828 to 485,451
GFF1825
Position (kb) 480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.292 kb on + strand, within GFF1822 at 479.424 kb on + strand, within GFF1822 at 479.425 kb on - strand, within GFF1822 at 479.425 kb on - strand, within GFF1822 at 480.031 kb on - strand at 480.031 kb on - strand at 480.041 kb on + strand at 480.106 kb on - strand at 480.173 kb on + strand at 480.174 kb on - strand at 480.393 kb on + strand, within GFF1823 at 480.393 kb on + strand, within GFF1823 at 480.393 kb on + strand, within GFF1823 at 480.394 kb on - strand, within GFF1823 at 480.394 kb on - strand, within GFF1823 at 480.537 kb on + strand, within GFF1823 at 480.753 kb on + strand, within GFF1823 at 480.754 kb on - strand, within GFF1823 at 480.863 kb on + strand at 480.863 kb on + strand at 480.864 kb on - strand at 480.906 kb on + strand at 480.906 kb on + strand at 480.907 kb on - strand at 480.907 kb on - strand at 481.108 kb on - strand, within GFF1824 at 481.227 kb on + strand, within GFF1824 at 481.228 kb on - strand, within GFF1824 at 481.314 kb on + strand, within GFF1824 at 481.315 kb on - strand, within GFF1824 at 481.315 kb on - strand, within GFF1824 at 481.315 kb on - strand, within GFF1824 at 481.419 kb on + strand, within GFF1824 at 481.419 kb on + strand, within GFF1824 at 481.420 kb on - strand, within GFF1824 at 481.470 kb on + strand, within GFF1824
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 479,292 + GFF1822 0.65 +0.1 479,424 + GFF1822 0.74 +0.6 479,425 - GFF1822 0.74 +0.8 479,425 - GFF1822 0.74 -2.8 480,031 - -0.8 480,031 - -0.6 480,041 + -0.2 480,106 - -0.2 480,173 + +0.1 480,174 - -0.5 480,393 + GFF1823 0.26 +0.4 480,393 + GFF1823 0.26 -0.2 480,393 + GFF1823 0.26 -2.9 480,394 - GFF1823 0.26 +0.1 480,394 - GFF1823 0.26 +0.1 480,537 + GFF1823 0.46 -0.2 480,753 + GFF1823 0.77 -1.5 480,754 - GFF1823 0.77 +0.2 480,863 + -0.6 480,863 + +0.1 480,864 - +0.6 480,906 + +0.1 480,906 + -0.4 480,907 - +1.2 480,907 - -1.3 481,108 - GFF1824 0.20 -0.1 481,227 + GFF1824 0.33 +0.0 481,228 - GFF1824 0.33 +0.0 481,314 + GFF1824 0.43 -0.8 481,315 - GFF1824 0.43 +0.6 481,315 - GFF1824 0.43 +1.2 481,315 - GFF1824 0.43 +1.8 481,419 + GFF1824 0.54 +0.1 481,419 + GFF1824 0.54 +2.4 481,420 - GFF1824 0.55 +0.5 481,470 + GFF1824 0.60 -0.1
Or see this region's nucleotide sequence