Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1816 and GFF1817 are separated by 126 nucleotides GFF1817 and GFF1818 are separated by 180 nucleotides
GFF1816 - hypothetical protein, at 472,178 to 472,555
GFF1816
GFF1817 - Phosphoserine aminotransferase, at 472,682 to 473,857
GFF1817
GFF1818 - D-3-phosphoglycerate dehydrogenase, at 474,038 to 475,624
GFF1818
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.697 kb on - strand at 471.775 kb on + strand at 471.786 kb on + strand at 471.848 kb on - strand at 471.982 kb on + strand at 472.005 kb on - strand at 472.045 kb on + strand at 472.082 kb on + strand at 472.108 kb on - strand at 472.153 kb on + strand at 472.154 kb on - strand at 472.157 kb on + strand at 472.157 kb on + strand at 472.158 kb on - strand at 472.158 kb on - strand at 472.202 kb on + strand at 472.202 kb on + strand at 472.203 kb on - strand at 472.203 kb on - strand at 472.270 kb on + strand, within GFF1816 at 472.270 kb on + strand, within GFF1816 at 472.271 kb on - strand, within GFF1816 at 472.271 kb on - strand, within GFF1816 at 472.321 kb on + strand, within GFF1816 at 472.322 kb on - strand, within GFF1816 at 472.355 kb on + strand, within GFF1816 at 472.356 kb on - strand, within GFF1816 at 472.388 kb on + strand, within GFF1816 at 472.388 kb on + strand, within GFF1816 at 472.464 kb on - strand, within GFF1816 at 472.464 kb on - strand, within GFF1816 at 472.464 kb on - strand, within GFF1816 at 472.621 kb on + strand at 472.668 kb on + strand at 472.668 kb on + strand at 472.668 kb on + strand at 472.669 kb on - strand at 472.669 kb on - strand at 474.083 kb on - strand at 474.173 kb on + strand at 474.173 kb on + strand at 474.173 kb on + strand at 474.724 kb on + strand, within GFF1818 at 474.724 kb on + strand, within GFF1818 at 474.724 kb on + strand, within GFF1818
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 471,697 - -0.4 471,775 + -0.0 471,786 + +0.6 471,848 - +0.9 471,982 + -0.9 472,005 - -1.0 472,045 + +0.0 472,082 + +0.4 472,108 - +0.8 472,153 + +0.1 472,154 - -1.1 472,157 + +0.8 472,157 + +1.8 472,158 - -1.5 472,158 - +1.0 472,202 + -0.5 472,202 + -0.2 472,203 - +1.1 472,203 - -0.6 472,270 + GFF1816 0.24 +0.2 472,270 + GFF1816 0.24 +0.6 472,271 - GFF1816 0.25 +0.4 472,271 - GFF1816 0.25 +0.7 472,321 + GFF1816 0.38 +0.5 472,322 - GFF1816 0.38 +1.0 472,355 + GFF1816 0.47 -0.5 472,356 - GFF1816 0.47 +1.1 472,388 + GFF1816 0.56 -0.1 472,388 + GFF1816 0.56 +1.3 472,464 - GFF1816 0.76 +0.7 472,464 - GFF1816 0.76 -2.2 472,464 - GFF1816 0.76 -1.5 472,621 + +0.1 472,668 + -0.9 472,668 + -0.1 472,668 + +1.3 472,669 - +0.5 472,669 - +2.0 474,083 - -0.2 474,173 + +0.8 474,173 + -1.1 474,173 + +0.7 474,724 + GFF1818 0.43 +0.1 474,724 + GFF1818 0.43 -0.4 474,724 + GFF1818 0.43 +0.8
Or see this region's nucleotide sequence