Strain Fitness in Xanthobacter sp. DMC5 around GFF1814

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1812 and GFF1813 overlap by 4 nucleotidesGFF1813 and GFF1814 are separated by 40 nucleotidesGFF1814 and GFF1815 overlap by 4 nucleotides GFF1812 - putative periplasmic iron-binding protein, at 467,939 to 468,862 GFF1812 GFF1813 - Manganese transport system ATP-binding protein MntB, at 468,859 to 469,755 GFF1813 GFF1814 - Manganese transport system membrane protein MntB, at 469,796 to 470,806 GFF1814 GFF1815 - Manganese transport system membrane protein MntB, at 470,803 to 471,633 GFF1815 Position (kb) 469 470 471Strain fitness (log2 ratio) -1 0 1at 469.699 kb on + strandat 469.699 kb on + strandat 471.661 kb on - strandat 471.665 kb on + strandat 471.697 kb on - strandat 471.775 kb on + strandat 471.786 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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469,699 + -0.4
469,699 + +0.4
471,661 - -0.9
471,665 + +0.9
471,697 - -0.4
471,775 + -0.0
471,786 + +0.6

Or see this region's nucleotide sequence