Strain Fitness in Xanthobacter sp. DMC5 around GFF1807

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1806 and GFF1807 are separated by 151 nucleotidesGFF1807 and GFF1808 overlap by 4 nucleotides GFF1806 - 33 kDa chaperonin, at 459,667 to 460,674 GFF1806 GFF1807 - Ornithine carbamoyltransferase, anabolic, at 460,826 to 461,758 GFF1807 GFF1808 - Succinylornithine transaminase/acetylornithine aminotransferase, at 461,755 to 462,963 GFF1808 Position (kb) 460 461 462Strain fitness (log2 ratio) -1 0 1at 459.891 kb on - strand, within GFF1806at 460.181 kb on + strand, within GFF1806at 460.350 kb on - strand, within GFF1806at 460.772 kb on - strandat 460.772 kb on - strandat 460.772 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
459,891 - GFF1806 0.22 -0.1
460,181 + GFF1806 0.51 -1.1
460,350 - GFF1806 0.68 -0.2
460,772 - +0.4
460,772 - +0.9
460,772 - +0.2

Or see this region's nucleotide sequence