Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1804 and GFF1805 are separated by 14 nucleotides GFF1805 and GFF1806 are separated by 226 nucleotides
GFF1804 - hypothetical protein, at 456,679 to 458,157
GFF1804
GFF1805 - N-carbamoyl-L-amino acid hydrolase, at 458,172 to 459,440
GFF1805
GFF1806 - 33 kDa chaperonin, at 459,667 to 460,674
GFF1806
Position (kb) 458
459
460 Strain fitness (log2 ratio) -1
0
1 at 457.188 kb on + strand, within GFF1804 at 457.188 kb on + strand, within GFF1804 at 457.189 kb on - strand, within GFF1804 at 457.297 kb on + strand, within GFF1804 at 457.324 kb on + strand, within GFF1804 at 457.324 kb on + strand, within GFF1804 at 457.325 kb on - strand, within GFF1804 at 457.325 kb on - strand, within GFF1804 at 457.325 kb on - strand, within GFF1804 at 457.456 kb on + strand, within GFF1804 at 457.558 kb on + strand, within GFF1804 at 457.558 kb on + strand, within GFF1804 at 457.646 kb on - strand, within GFF1804 at 457.657 kb on + strand, within GFF1804 at 457.657 kb on + strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.975 kb on + strand, within GFF1804 at 457.976 kb on - strand, within GFF1804 at 457.976 kb on - strand, within GFF1804 at 459.540 kb on + strand at 459.541 kb on - strand at 459.624 kb on - strand at 459.660 kb on + strand at 459.661 kb on - strand at 459.661 kb on - strand at 459.891 kb on - strand, within GFF1806 at 460.181 kb on + strand, within GFF1806 at 460.350 kb on - strand, within GFF1806
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 457,188 + GFF1804 0.34 -0.8 457,188 + GFF1804 0.34 +0.2 457,189 - GFF1804 0.34 -0.6 457,297 + GFF1804 0.42 +0.4 457,324 + GFF1804 0.44 -0.5 457,324 + GFF1804 0.44 +0.1 457,325 - GFF1804 0.44 -0.8 457,325 - GFF1804 0.44 -0.1 457,325 - GFF1804 0.44 -0.2 457,456 + GFF1804 0.53 +0.5 457,558 + GFF1804 0.59 -0.1 457,558 + GFF1804 0.59 +0.1 457,646 - GFF1804 0.65 +0.5 457,657 + GFF1804 0.66 -0.3 457,657 + GFF1804 0.66 +0.1 457,658 - GFF1804 0.66 -0.4 457,658 - GFF1804 0.66 -1.3 457,658 - GFF1804 0.66 +0.8 457,658 - GFF1804 0.66 -1.3 457,658 - GFF1804 0.66 -0.1 457,975 + GFF1804 0.88 -0.1 457,976 - GFF1804 0.88 -1.1 457,976 - GFF1804 0.88 +0.3 459,540 + -0.4 459,541 - +0.5 459,624 - +0.7 459,660 + +0.4 459,661 - -0.6 459,661 - -0.2 459,891 - GFF1806 0.22 -0.1 460,181 + GFF1806 0.51 -1.1 460,350 - GFF1806 0.68 -0.2
Or see this region's nucleotide sequence