Strain Fitness in Xanthobacter sp. DMC5 around GFF180

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF179 and GFF180 are separated by 43 nucleotidesGFF180 and GFF181 overlap by 1 nucleotidesGFF181 and GFF182 are separated by 10 nucleotides GFF179 - hypothetical protein, at 187,406 to 188,449 GFF179 GFF180 - hypothetical protein, at 188,493 to 189,674 GFF180 GFF181 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 189,674 to 190,501 GFF181 GFF182 - Long-chain-fatty-acid--CoA ligase FadD15, at 190,512 to 192,317 GFF182 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.542 kb on - strand, within GFF179at 187.542 kb on - strand, within GFF179at 187.605 kb on - strand, within GFF179at 187.605 kb on - strand, within GFF179at 187.606 kb on + strand, within GFF179at 187.607 kb on - strand, within GFF179at 187.656 kb on - strand, within GFF179at 187.657 kb on + strand, within GFF179at 187.658 kb on - strand, within GFF179at 187.658 kb on - strand, within GFF179at 187.658 kb on - strand, within GFF179at 187.705 kb on + strand, within GFF179at 187.705 kb on + strand, within GFF179at 187.706 kb on - strand, within GFF179at 187.743 kb on + strand, within GFF179at 187.743 kb on + strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.781 kb on + strand, within GFF179at 187.782 kb on - strand, within GFF179at 187.926 kb on - strand, within GFF179at 188.027 kb on - strand, within GFF179at 188.063 kb on + strand, within GFF179at 188.127 kb on - strand, within GFF179at 188.127 kb on - strand, within GFF179at 188.178 kb on - strand, within GFF179at 188.274 kb on - strand, within GFF179at 188.274 kb on - strand, within GFF179at 188.373 kb on + strandat 188.374 kb on - strandat 188.670 kb on + strand, within GFF180at 188.670 kb on + strand, within GFF180at 188.670 kb on + strand, within GFF180at 188.670 kb on + strand, within GFF180at 188.671 kb on - strand, within GFF180at 188.671 kb on - strand, within GFF180at 188.727 kb on + strand, within GFF180at 188.728 kb on - strand, within GFF180at 188.742 kb on + strand, within GFF180at 188.753 kb on + strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.805 kb on + strand, within GFF180at 188.806 kb on - strand, within GFF180at 188.806 kb on - strand, within GFF180at 188.808 kb on + strand, within GFF180at 188.808 kb on + strand, within GFF180at 188.919 kb on + strand, within GFF180at 188.920 kb on - strand, within GFF180at 188.949 kb on + strand, within GFF180at 188.950 kb on - strand, within GFF180at 189.175 kb on + strand, within GFF180at 189.192 kb on + strand, within GFF180at 189.192 kb on + strand, within GFF180at 189.346 kb on - strand, within GFF180at 189.346 kb on - strand, within GFF180at 189.348 kb on + strand, within GFF180at 189.351 kb on + strand, within GFF180at 189.352 kb on - strand, within GFF180at 189.408 kb on + strand, within GFF180at 189.409 kb on - strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.609 kb on + strandat 189.609 kb on + strandat 189.609 kb on + strandat 189.725 kb on + strandat 189.725 kb on + strandat 189.726 kb on - strandat 189.726 kb on - strandat 189.872 kb on - strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.076 kb on + strand, within GFF181at 190.077 kb on - strand, within GFF181at 190.082 kb on + strand, within GFF181at 190.082 kb on + strand, within GFF181at 190.083 kb on - strand, within GFF181at 190.083 kb on - strand, within GFF181at 190.125 kb on - strand, within GFF181at 190.334 kb on + strand, within GFF181at 190.334 kb on + strand, within GFF181at 190.335 kb on - strand, within GFF181at 190.335 kb on - strand, within GFF181at 190.340 kb on + strand, within GFF181at 190.340 kb on + strand, within GFF181at 190.418 kb on + strand, within GFF181at 190.455 kb on - strandat 190.472 kb on + strandat 190.473 kb on - strandat 190.473 kb on - strandat 190.641 kb on + strandat 190.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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187,542 - GFF179 0.13 -1.5
187,542 - GFF179 0.13 -1.3
187,605 - GFF179 0.19 -0.4
187,605 - GFF179 0.19 +0.2
187,606 + GFF179 0.19 -0.3
187,607 - GFF179 0.19 -0.7
187,656 - GFF179 0.24 -0.1
187,657 + GFF179 0.24 -0.3
187,658 - GFF179 0.24 -0.1
187,658 - GFF179 0.24 +0.2
187,658 - GFF179 0.24 +0.2
187,705 + GFF179 0.29 -1.1
187,705 + GFF179 0.29 +0.2
187,706 - GFF179 0.29 +0.4
187,743 + GFF179 0.32 +0.8
187,743 + GFF179 0.32 +1.2
187,744 - GFF179 0.32 -0.2
187,744 - GFF179 0.32 +0.3
187,744 - GFF179 0.32 +0.7
187,744 - GFF179 0.32 -0.5
187,781 + GFF179 0.36 -0.8
187,782 - GFF179 0.36 +0.4
187,926 - GFF179 0.50 +0.4
188,027 - GFF179 0.59 +0.4
188,063 + GFF179 0.63 +0.3
188,127 - GFF179 0.69 -0.4
188,127 - GFF179 0.69 -0.7
188,178 - GFF179 0.74 +0.9
188,274 - GFF179 0.83 -0.9
188,274 - GFF179 0.83 +0.4
188,373 + -2.8
188,374 - +1.3
188,670 + GFF180 0.15 +0.5
188,670 + GFF180 0.15 +0.7
188,670 + GFF180 0.15 +0.3
188,670 + GFF180 0.15 -0.2
188,671 - GFF180 0.15 -0.3
188,671 - GFF180 0.15 -0.0
188,727 + GFF180 0.20 +0.2
188,728 - GFF180 0.20 -0.2
188,742 + GFF180 0.21 -0.6
188,753 + GFF180 0.22 -0.6
188,754 - GFF180 0.22 -1.9
188,754 - GFF180 0.22 +0.7
188,754 - GFF180 0.22 +0.7
188,805 + GFF180 0.26 +0.1
188,806 - GFF180 0.26 +0.4
188,806 - GFF180 0.26 -0.3
188,808 + GFF180 0.27 +1.2
188,808 + GFF180 0.27 -0.7
188,919 + GFF180 0.36 -0.2
188,920 - GFF180 0.36 -0.3
188,949 + GFF180 0.39 +1.3
188,950 - GFF180 0.39 +1.9
189,175 + GFF180 0.58 +0.3
189,192 + GFF180 0.59 -0.3
189,192 + GFF180 0.59 -1.1
189,346 - GFF180 0.72 -0.1
189,346 - GFF180 0.72 +0.2
189,348 + GFF180 0.72 +0.4
189,351 + GFF180 0.73 -0.0
189,352 - GFF180 0.73 -0.1
189,408 + GFF180 0.77 -1.8
189,409 - GFF180 0.77 +1.6
189,423 + GFF180 0.79 -0.0
189,423 + GFF180 0.79 -1.2
189,423 + GFF180 0.79 -0.6
189,609 + -1.3
189,609 + +1.4
189,609 + +0.6
189,725 + +0.4
189,725 + -1.0
189,726 - -1.1
189,726 - -1.1
189,872 - GFF181 0.24 -1.8
190,016 + GFF181 0.41 -0.7
190,016 + GFF181 0.41 -1.5
190,016 + GFF181 0.41 -0.5
190,076 + GFF181 0.49 -2.0
190,077 - GFF181 0.49 -0.4
190,082 + GFF181 0.49 -1.3
190,082 + GFF181 0.49 -1.5
190,083 - GFF181 0.49 -0.3
190,083 - GFF181 0.49 -1.5
190,125 - GFF181 0.54 -1.3
190,334 + GFF181 0.80 +1.2
190,334 + GFF181 0.80 -1.1
190,335 - GFF181 0.80 -0.1
190,335 - GFF181 0.80 -1.3
190,340 + GFF181 0.80 +0.0
190,340 + GFF181 0.80 +0.6
190,418 + GFF181 0.90 -1.3
190,455 - -0.8
190,472 + -1.3
190,473 - -0.0
190,473 - -1.3
190,641 + -0.2
190,641 + +0.3

Or see this region's nucleotide sequence