Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1794 and GFF1795 are separated by 154 nucleotides GFF1795 and GFF1796 are separated by 122 nucleotides GFF1796 and GFF1797 are separated by 159 nucleotides
GFF1794 - tRNA-specific 2-thiouridylase MnmA, at 443,022 to 444,203
GFF1794
GFF1795 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 444,358 to 447,162
GFF1795
GFF1796 - hypothetical protein, at 447,285 to 447,755
GFF1796
GFF1797 - Biosynthetic peptidoglycan transglycosylase, at 447,915 to 450,140
GFF1797
Position (kb) 444
445
446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 444.255 kb on - strand at 444.255 kb on - strand at 444.489 kb on - strand at 445.215 kb on - strand, within GFF1795 at 445.544 kb on + strand, within GFF1795 at 445.545 kb on - strand, within GFF1795 at 445.545 kb on - strand, within GFF1795 at 445.545 kb on - strand, within GFF1795 at 447.274 kb on - strand at 447.274 kb on - strand at 447.708 kb on + strand, within GFF1796 at 447.736 kb on - strand at 447.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 444,255 - +0.6 444,255 - +0.2 444,489 - -1.3 445,215 - GFF1795 0.31 -2.1 445,544 + GFF1795 0.42 -3.5 445,545 - GFF1795 0.42 -1.1 445,545 - GFF1795 0.42 -0.8 445,545 - GFF1795 0.42 +0.4 447,274 - -1.3 447,274 - +0.6 447,708 + GFF1796 0.90 +0.1 447,736 - -0.8 447,897 + -0.6
Or see this region's nucleotide sequence