Strain Fitness in Xanthobacter sp. DMC5 around GFF1794

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1792 and GFF1793 are separated by 215 nucleotidesGFF1793 and GFF1794 are separated by 24 nucleotidesGFF1794 and GFF1795 are separated by 154 nucleotides GFF1792 - Putative aminoacrylate hydrolase RutD, at 441,172 to 442,137 GFF1792 GFF1793 - Aklanonic acid methyltransferase DauC, at 442,353 to 442,997 GFF1793 GFF1794 - tRNA-specific 2-thiouridylase MnmA, at 443,022 to 444,203 GFF1794 GFF1795 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 444,358 to 447,162 GFF1795 Position (kb) 443 444 445Strain fitness (log2 ratio) -1 0 1at 442.157 kb on - strandat 442.157 kb on - strandat 442.281 kb on - strandat 442.985 kb on - strandat 444.255 kb on - strandat 444.255 kb on - strandat 444.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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442,157 - +0.2
442,157 - +0.5
442,281 - +1.1
442,985 - +0.6
444,255 - +0.6
444,255 - +0.2
444,489 - -1.3

Or see this region's nucleotide sequence