Strain Fitness in Xanthobacter sp. DMC5 around GFF1793

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1792 and GFF1793 are separated by 215 nucleotidesGFF1793 and GFF1794 are separated by 24 nucleotides GFF1792 - Putative aminoacrylate hydrolase RutD, at 441,172 to 442,137 GFF1792 GFF1793 - Aklanonic acid methyltransferase DauC, at 442,353 to 442,997 GFF1793 GFF1794 - tRNA-specific 2-thiouridylase MnmA, at 443,022 to 444,203 GFF1794 Position (kb) 442 443Strain fitness (log2 ratio) -1 0 1at 441.878 kb on + strand, within GFF1792at 442.157 kb on - strandat 442.157 kb on - strandat 442.281 kb on - strandat 442.985 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
441,878 + GFF1792 0.73 +0.4
442,157 - +0.2
442,157 - +0.5
442,281 - +1.1
442,985 - +0.6

Or see this region's nucleotide sequence