Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1784 and GFF1785 are separated by 71 nucleotides GFF1785 and GFF1786 are separated by 225 nucleotides GFF1786 and GFF1787 are separated by 12 nucleotides
GFF1784 - hypothetical protein, at 434,019 to 434,489
GFF1784
GFF1785 - 50S ribosomal protein L28, at 434,561 to 434,857
GFF1785
GFF1786 - Endo-1,4-beta-xylanase A, at 435,083 to 435,613
GFF1786
GFF1787 - HTH-type transcriptional regulator HdfR, at 435,626 to 436,675
GFF1787
Position (kb) 435
436 Strain fitness (log2 ratio) -1
0
1 at 434.105 kb on - strand, within GFF1784 at 434.181 kb on + strand, within GFF1784 at 434.182 kb on - strand, within GFF1784 at 434.182 kb on - strand, within GFF1784 at 434.182 kb on - strand, within GFF1784 at 434.184 kb on + strand, within GFF1784 at 434.185 kb on - strand, within GFF1784 at 434.439 kb on + strand, within GFF1784 at 434.881 kb on - strand at 434.989 kb on - strand at 435.249 kb on - strand, within GFF1786 at 435.251 kb on - strand, within GFF1786 at 435.596 kb on + strand at 435.924 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.053 kb on + strand, within GFF1787 at 436.368 kb on + strand, within GFF1787
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 434,105 - GFF1784 0.18 +0.4 434,181 + GFF1784 0.34 +0.6 434,182 - GFF1784 0.35 -1.0 434,182 - GFF1784 0.35 +0.1 434,182 - GFF1784 0.35 -0.0 434,184 + GFF1784 0.35 -1.3 434,185 - GFF1784 0.35 +0.1 434,439 + GFF1784 0.89 +0.1 434,881 - +0.3 434,989 - -0.3 435,249 - GFF1786 0.31 +0.4 435,251 - GFF1786 0.32 +0.1 435,596 + +0.8 435,924 + GFF1787 0.28 +0.4 436,038 + GFF1787 0.39 +0.0 436,038 + GFF1787 0.39 -1.5 436,038 + GFF1787 0.39 -0.8 436,053 + GFF1787 0.41 -0.5 436,368 + GFF1787 0.71 -0.4
Or see this region's nucleotide sequence