Strain Fitness in Xanthobacter sp. DMC5 around GFF1777

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1775 and GFF1776 are separated by 103 nucleotidesGFF1776 and GFF1777 are separated by 185 nucleotidesGFF1777 and GFF1778 overlap by 4 nucleotidesGFF1778 and GFF1779 are separated by 3 nucleotides GFF1775 - hypothetical protein, at 426,401 to 426,922 GFF1775 GFF1776 - hypothetical protein, at 427,026 to 427,442 GFF1776 GFF1777 - hypothetical protein, at 427,628 to 428,779 GFF1777 GFF1778 - Cytochrome c-type biogenesis protein CcmE, at 428,776 to 429,255 GFF1778 GFF1779 - Cytochrome c-type biogenesis protein CcmF, at 429,259 to 431,247 GFF1779 Position (kb) 427 428 429Strain fitness (log2 ratio) -2 -1 0 1at 427.285 kb on + strand, within GFF1776at 428.686 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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427,285 + GFF1776 0.62 -0.9
428,686 + -1.8

Or see this region's nucleotide sequence