Strain Fitness in Xanthobacter sp. DMC5 around GFF1776

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1774 and GFF1775 are separated by 339 nucleotidesGFF1775 and GFF1776 are separated by 103 nucleotidesGFF1776 and GFF1777 are separated by 185 nucleotides GFF1774 - 2-haloacrylate reductase, at 425,081 to 426,061 GFF1774 GFF1775 - hypothetical protein, at 426,401 to 426,922 GFF1775 GFF1776 - hypothetical protein, at 427,026 to 427,442 GFF1776 GFF1777 - hypothetical protein, at 427,628 to 428,779 GFF1777 Position (kb) 427 428Strain fitness (log2 ratio) -1 0 1at 426.167 kb on + strandat 426.333 kb on + strandat 426.390 kb on + strandat 427.285 kb on + strand, within GFF1776

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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426,167 + +0.9
426,333 + -1.6
426,390 + -1.0
427,285 + GFF1776 0.62 -0.9

Or see this region's nucleotide sequence