Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1769 and GFF1770 are separated by 165 nucleotides GFF1770 and GFF1771 are separated by 91 nucleotides GFF1771 and GFF1772 are separated by 175 nucleotides GFF1772 and GFF1773 are separated by 45 nucleotides
GFF1769 - Diaminopimelate epimerase, at 420,162 to 421,019
GFF1769
GFF1770 - hypothetical protein, at 421,185 to 421,832
GFF1770
GFF1771 - hypothetical protein, at 421,924 to 423,912
GFF1771
GFF1772 - RNA 2',3'-cyclic phosphodiesterase, at 424,088 to 424,618
GFF1772
GFF1773 - hypothetical protein, at 424,664 to 425,077
GFF1773
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -2
-1
0
1 at 421.057 kb on - strand at 421.057 kb on - strand at 421.141 kb on - strand at 421.450 kb on - strand, within GFF1770 at 421.537 kb on - strand, within GFF1770 at 421.537 kb on - strand, within GFF1770 at 421.566 kb on + strand, within GFF1770 at 421.567 kb on - strand, within GFF1770 at 421.699 kb on - strand, within GFF1770 at 421.717 kb on - strand, within GFF1770 at 421.753 kb on - strand, within GFF1770 at 421.887 kb on + strand at 421.888 kb on - strand at 422.194 kb on + strand, within GFF1771 at 422.284 kb on + strand, within GFF1771 at 422.284 kb on + strand, within GFF1771 at 422.285 kb on - strand, within GFF1771 at 422.602 kb on + strand, within GFF1771 at 422.602 kb on + strand, within GFF1771 at 422.603 kb on - strand, within GFF1771 at 422.603 kb on - strand, within GFF1771 at 422.632 kb on + strand, within GFF1771 at 422.632 kb on + strand, within GFF1771 at 422.632 kb on + strand, within GFF1771 at 422.633 kb on - strand, within GFF1771 at 422.644 kb on + strand, within GFF1771 at 422.645 kb on - strand, within GFF1771 at 422.645 kb on - strand, within GFF1771 at 422.661 kb on - strand, within GFF1771 at 422.661 kb on - strand, within GFF1771 at 422.720 kb on - strand, within GFF1771 at 422.800 kb on + strand, within GFF1771 at 424.193 kb on + strand, within GFF1772 at 424.193 kb on + strand, within GFF1772 at 424.193 kb on + strand, within GFF1772 at 424.194 kb on - strand, within GFF1772 at 424.194 kb on - strand, within GFF1772 at 424.433 kb on + strand, within GFF1772 at 424.433 kb on + strand, within GFF1772 at 424.434 kb on - strand, within GFF1772 at 424.824 kb on - strand, within GFF1773 at 424.826 kb on + strand, within GFF1773 at 424.826 kb on + strand, within GFF1773
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 421,057 - -0.2 421,057 - +0.7 421,141 - -1.1 421,450 - GFF1770 0.41 -2.0 421,537 - GFF1770 0.54 -0.8 421,537 - GFF1770 0.54 +0.7 421,566 + GFF1770 0.59 -0.2 421,567 - GFF1770 0.59 -0.7 421,699 - GFF1770 0.79 +1.4 421,717 - GFF1770 0.82 -1.2 421,753 - GFF1770 0.88 -1.1 421,887 + -0.4 421,888 - -2.3 422,194 + GFF1771 0.14 +0.0 422,284 + GFF1771 0.18 -0.9 422,284 + GFF1771 0.18 +0.7 422,285 - GFF1771 0.18 +1.4 422,602 + GFF1771 0.34 +0.7 422,602 + GFF1771 0.34 -0.3 422,603 - GFF1771 0.34 -0.3 422,603 - GFF1771 0.34 -1.3 422,632 + GFF1771 0.36 +0.7 422,632 + GFF1771 0.36 -0.7 422,632 + GFF1771 0.36 +0.0 422,633 - GFF1771 0.36 +0.2 422,644 + GFF1771 0.36 -1.5 422,645 - GFF1771 0.36 +0.0 422,645 - GFF1771 0.36 +0.3 422,661 - GFF1771 0.37 -0.1 422,661 - GFF1771 0.37 +0.0 422,720 - GFF1771 0.40 -0.1 422,800 + GFF1771 0.44 -0.4 424,193 + GFF1772 0.20 -1.0 424,193 + GFF1772 0.20 -0.9 424,193 + GFF1772 0.20 -0.2 424,194 - GFF1772 0.20 -0.5 424,194 - GFF1772 0.20 +0.7 424,433 + GFF1772 0.65 -0.5 424,433 + GFF1772 0.65 -1.5 424,434 - GFF1772 0.65 +1.0 424,824 - GFF1773 0.39 +0.4 424,826 + GFF1773 0.39 +1.5 424,826 + GFF1773 0.39 -0.6
Or see this region's nucleotide sequence