Strain Fitness in Xanthobacter sp. DMC5 around GFF1769

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1768 and GFF1769 overlap by 1 nucleotidesGFF1769 and GFF1770 are separated by 165 nucleotidesGFF1770 and GFF1771 are separated by 91 nucleotides GFF1768 - Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB, at 418,876 to 420,162 GFF1768 GFF1769 - Diaminopimelate epimerase, at 420,162 to 421,019 GFF1769 GFF1770 - hypothetical protein, at 421,185 to 421,832 GFF1770 GFF1771 - hypothetical protein, at 421,924 to 423,912 GFF1771 Position (kb) 420 421 422Strain fitness (log2 ratio) -2 -1 0 1at 420.152 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.141 kb on - strandat 421.450 kb on - strand, within GFF1770at 421.537 kb on - strand, within GFF1770at 421.537 kb on - strand, within GFF1770at 421.566 kb on + strand, within GFF1770at 421.567 kb on - strand, within GFF1770at 421.699 kb on - strand, within GFF1770at 421.717 kb on - strand, within GFF1770at 421.753 kb on - strand, within GFF1770at 421.887 kb on + strandat 421.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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420,152 - +0.1
421,057 - -0.2
421,057 - +0.7
421,141 - -1.1
421,450 - GFF1770 0.41 -2.0
421,537 - GFF1770 0.54 -0.8
421,537 - GFF1770 0.54 +0.7
421,566 + GFF1770 0.59 -0.2
421,567 - GFF1770 0.59 -0.7
421,699 - GFF1770 0.79 +1.4
421,717 - GFF1770 0.82 -1.2
421,753 - GFF1770 0.88 -1.1
421,887 + -0.4
421,888 - -2.3

Or see this region's nucleotide sequence