Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF175 and GFF176 are separated by 442 nucleotides GFF176 and GFF177 are separated by 126 nucleotides GFF177 and GFF178 overlap by 1 nucleotides
GFF175 - hypothetical protein, at 183,606 to 184,343
GFF175
GFF176 - hypothetical protein, at 184,786 to 185,547
GFF176
GFF177 - Lipopolysaccharide export system ATP-binding protein LptB, at 185,674 to 186,528
GFF177
GFF178 - High-affinity branched-chain amino acid transport system permease protein LivH, at 186,528 to 187,406
GFF178
Position (kb) 184
185
186 Strain fitness (log2 ratio) -2
-1
0
1 at 183.951 kb on + strand, within GFF175 at 183.952 kb on - strand, within GFF175 at 184.070 kb on + strand, within GFF175 at 184.070 kb on + strand, within GFF175 at 184.226 kb on + strand, within GFF175 at 184.226 kb on + strand, within GFF175 at 184.226 kb on + strand, within GFF175 at 184.227 kb on - strand, within GFF175 at 184.255 kb on + strand, within GFF175 at 185.230 kb on - strand, within GFF176 at 185.872 kb on + strand, within GFF177 at 185.873 kb on - strand, within GFF177 at 185.873 kb on - strand, within GFF177 at 186.065 kb on - strand, within GFF177 at 186.179 kb on - strand, within GFF177 at 186.179 kb on - strand, within GFF177 at 186.369 kb on + strand, within GFF177 at 186.370 kb on - strand, within GFF177 at 186.370 kb on - strand, within GFF177 at 186.370 kb on - strand, within GFF177 at 186.464 kb on - strand at 186.464 kb on - strand at 186.464 kb on - strand at 186.464 kb on - strand at 186.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 183,951 + GFF175 0.47 +0.7 183,952 - GFF175 0.47 -0.4 184,070 + GFF175 0.63 +0.1 184,070 + GFF175 0.63 -0.3 184,226 + GFF175 0.84 -1.6 184,226 + GFF175 0.84 -0.0 184,226 + GFF175 0.84 +0.0 184,227 - GFF175 0.84 -2.1 184,255 + GFF175 0.88 +0.8 185,230 - GFF176 0.58 +0.4 185,872 + GFF177 0.23 -0.5 185,873 - GFF177 0.23 -0.6 185,873 - GFF177 0.23 -1.8 186,065 - GFF177 0.46 -1.1 186,179 - GFF177 0.59 +0.5 186,179 - GFF177 0.59 -0.2 186,369 + GFF177 0.81 -0.6 186,370 - GFF177 0.81 +1.2 186,370 - GFF177 0.81 -0.7 186,370 - GFF177 0.81 -0.6 186,464 - -0.4 186,464 - -0.6 186,464 - +0.9 186,464 - +0.5 186,464 - +1.4
Or see this region's nucleotide sequence