Strain Fitness in Xanthobacter sp. DMC5 around GFF1759

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1757 and GFF1758 are separated by 420 nucleotidesGFF1758 and GFF1759 are separated by 122 nucleotidesGFF1759 and GFF1760 are separated by 71 nucleotides GFF1757 - Aquaporin Z, at 406,702 to 407,391 GFF1757 GFF1758 - hypothetical protein, at 407,812 to 408,093 GFF1758 GFF1759 - hypothetical protein, at 408,216 to 410,783 GFF1759 GFF1760 - Glucans biosynthesis glucosyltransferase H, at 410,855 to 412,687 GFF1760 Position (kb) 408 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 407.244 kb on - strand, within GFF1757at 407.381 kb on + strandat 407.382 kb on - strandat 407.385 kb on + strandat 407.385 kb on + strandat 407.386 kb on - strandat 407.669 kb on + strandat 407.707 kb on + strandat 407.766 kb on - strandat 407.766 kb on - strandat 407.852 kb on - strand, within GFF1758at 407.959 kb on + strand, within GFF1758at 407.959 kb on + strand, within GFF1758at 407.960 kb on - strand, within GFF1758at 407.974 kb on + strand, within GFF1758at 407.975 kb on - strand, within GFF1758at 408.175 kb on + strandat 408.175 kb on + strandat 408.175 kb on + strandat 408.176 kb on - strandat 408.176 kb on - strandat 408.176 kb on - strandat 408.372 kb on + strandat 408.373 kb on - strandat 408.405 kb on + strandat 408.492 kb on + strand, within GFF1759at 408.685 kb on - strand, within GFF1759at 408.685 kb on - strand, within GFF1759at 408.882 kb on + strand, within GFF1759at 408.883 kb on - strand, within GFF1759at 408.883 kb on - strand, within GFF1759at 409.191 kb on + strand, within GFF1759at 409.191 kb on + strand, within GFF1759at 409.192 kb on - strand, within GFF1759at 409.194 kb on + strand, within GFF1759at 409.194 kb on + strand, within GFF1759at 409.195 kb on - strand, within GFF1759at 409.195 kb on - strand, within GFF1759at 409.521 kb on + strand, within GFF1759at 409.521 kb on + strand, within GFF1759at 409.522 kb on - strand, within GFF1759at 409.605 kb on + strand, within GFF1759at 409.606 kb on - strand, within GFF1759at 409.606 kb on - strand, within GFF1759at 409.606 kb on - strand, within GFF1759at 409.635 kb on + strand, within GFF1759at 409.635 kb on + strand, within GFF1759at 409.636 kb on - strand, within GFF1759at 409.644 kb on + strand, within GFF1759at 409.645 kb on - strand, within GFF1759at 409.656 kb on + strand, within GFF1759at 409.689 kb on + strand, within GFF1759at 409.690 kb on - strand, within GFF1759at 409.692 kb on - strand, within GFF1759at 409.701 kb on + strand, within GFF1759at 409.704 kb on - strand, within GFF1759at 409.704 kb on - strand, within GFF1759at 409.740 kb on + strand, within GFF1759at 409.753 kb on - strand, within GFF1759at 409.788 kb on + strand, within GFF1759at 409.788 kb on + strand, within GFF1759at 409.806 kb on + strand, within GFF1759at 409.807 kb on - strand, within GFF1759at 409.807 kb on - strand, within GFF1759at 409.911 kb on + strand, within GFF1759at 409.923 kb on + strand, within GFF1759at 409.923 kb on + strand, within GFF1759at 409.941 kb on + strand, within GFF1759at 409.941 kb on + strand, within GFF1759at 409.942 kb on - strand, within GFF1759at 410.161 kb on - strand, within GFF1759at 410.161 kb on - strand, within GFF1759at 410.161 kb on - strand, within GFF1759at 410.161 kb on - strand, within GFF1759at 410.245 kb on - strand, within GFF1759at 410.245 kb on - strand, within GFF1759at 410.304 kb on + strand, within GFF1759at 410.304 kb on + strand, within GFF1759at 410.305 kb on - strand, within GFF1759at 410.305 kb on - strand, within GFF1759at 410.556 kb on - strandat 410.604 kb on + strandat 411.012 kb on + strandat 411.012 kb on + strandat 411.012 kb on + strandat 411.012 kb on + strandat 411.013 kb on - strandat 411.013 kb on - strandat 411.382 kb on - strand, within GFF1760at 411.408 kb on + strand, within GFF1760at 411.564 kb on + strand, within GFF1760at 411.636 kb on + strand, within GFF1760at 411.636 kb on + strand, within GFF1760

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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407,244 - GFF1757 0.79 -0.3
407,381 + -0.1
407,382 - -0.1
407,385 + +0.5
407,385 + -1.0
407,386 - -0.8
407,669 + +0.7
407,707 + -2.0
407,766 - -0.8
407,766 - +0.6
407,852 - GFF1758 0.14 -0.5
407,959 + GFF1758 0.52 -0.2
407,959 + GFF1758 0.52 -0.6
407,960 - GFF1758 0.52 -0.0
407,974 + GFF1758 0.57 -0.3
407,975 - GFF1758 0.58 -0.2
408,175 + -1.8
408,175 + -0.3
408,175 + +1.9
408,176 - -0.5
408,176 - +0.4
408,176 - +0.6
408,372 + -0.2
408,373 - +0.1
408,405 + +0.3
408,492 + GFF1759 0.11 +0.8
408,685 - GFF1759 0.18 -1.5
408,685 - GFF1759 0.18 +0.5
408,882 + GFF1759 0.26 -0.1
408,883 - GFF1759 0.26 -3.1
408,883 - GFF1759 0.26 -1.5
409,191 + GFF1759 0.38 -1.0
409,191 + GFF1759 0.38 +0.3
409,192 - GFF1759 0.38 -0.0
409,194 + GFF1759 0.38 -0.5
409,194 + GFF1759 0.38 +0.3
409,195 - GFF1759 0.38 -0.2
409,195 - GFF1759 0.38 +2.6
409,521 + GFF1759 0.51 +0.2
409,521 + GFF1759 0.51 +0.5
409,522 - GFF1759 0.51 -0.2
409,605 + GFF1759 0.54 -0.3
409,606 - GFF1759 0.54 +0.1
409,606 - GFF1759 0.54 +1.8
409,606 - GFF1759 0.54 -1.3
409,635 + GFF1759 0.55 +0.4
409,635 + GFF1759 0.55 +0.2
409,636 - GFF1759 0.55 +0.2
409,644 + GFF1759 0.56 -0.6
409,645 - GFF1759 0.56 -1.2
409,656 + GFF1759 0.56 +0.6
409,689 + GFF1759 0.57 +1.1
409,690 - GFF1759 0.57 -1.6
409,692 - GFF1759 0.57 +0.4
409,701 + GFF1759 0.58 +0.5
409,704 - GFF1759 0.58 -0.4
409,704 - GFF1759 0.58 +0.2
409,740 + GFF1759 0.59 +1.0
409,753 - GFF1759 0.60 +0.1
409,788 + GFF1759 0.61 -0.5
409,788 + GFF1759 0.61 +0.4
409,806 + GFF1759 0.62 +0.7
409,807 - GFF1759 0.62 -0.6
409,807 - GFF1759 0.62 -0.2
409,911 + GFF1759 0.66 -0.7
409,923 + GFF1759 0.66 +1.1
409,923 + GFF1759 0.66 -0.6
409,941 + GFF1759 0.67 +0.6
409,941 + GFF1759 0.67 -0.6
409,942 - GFF1759 0.67 -0.5
410,161 - GFF1759 0.76 +0.6
410,161 - GFF1759 0.76 +0.9
410,161 - GFF1759 0.76 +0.0
410,161 - GFF1759 0.76 -0.7
410,245 - GFF1759 0.79 +0.6
410,245 - GFF1759 0.79 +0.0
410,304 + GFF1759 0.81 -2.3
410,304 + GFF1759 0.81 -0.5
410,305 - GFF1759 0.81 -1.9
410,305 - GFF1759 0.81 -0.7
410,556 - -0.2
410,604 + -1.1
411,012 + -0.4
411,012 + -1.1
411,012 + +0.2
411,012 + -1.4
411,013 - -1.2
411,013 - +1.5
411,382 - GFF1760 0.29 +0.4
411,408 + GFF1760 0.30 -0.6
411,564 + GFF1760 0.39 -0.2
411,636 + GFF1760 0.43 -1.3
411,636 + GFF1760 0.43 +1.0

Or see this region's nucleotide sequence