Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1751 and GFF1752 are separated by 31 nucleotides GFF1752 and GFF1753 are separated by 6 nucleotides GFF1753 and GFF1754 overlap by 4 nucleotides
GFF1751 - Dimethyl sulfoxide reductase DmsA, at 399,233 to 401,353
GFF1751
GFF1752 - hypothetical protein, at 401,385 to 402,266
GFF1752
GFF1753 - Phosphoribosylglycinamide formyltransferase, at 402,273 to 402,932
GFF1753
GFF1754 - Phosphoribosylformylglycinamidine cyclo-ligase, at 402,929 to 404,002
GFF1754
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1 at 400.407 kb on + strand, within GFF1751 at 400.408 kb on - strand, within GFF1751 at 400.408 kb on - strand, within GFF1751 at 400.408 kb on - strand, within GFF1751 at 400.468 kb on - strand, within GFF1751 at 400.589 kb on + strand, within GFF1751 at 400.589 kb on + strand, within GFF1751 at 400.589 kb on + strand, within GFF1751 at 400.589 kb on + strand, within GFF1751 at 400.590 kb on - strand, within GFF1751 at 400.590 kb on - strand, within GFF1751 at 400.590 kb on - strand, within GFF1751 at 400.590 kb on - strand, within GFF1751 at 401.172 kb on + strand at 401.172 kb on + strand at 401.173 kb on - strand at 401.173 kb on - strand at 401.548 kb on + strand, within GFF1752 at 401.549 kb on - strand, within GFF1752 at 401.549 kb on - strand, within GFF1752 at 401.549 kb on - strand, within GFF1752 at 401.549 kb on - strand, within GFF1752 at 401.554 kb on + strand, within GFF1752 at 401.554 kb on + strand, within GFF1752 at 401.554 kb on + strand, within GFF1752 at 401.555 kb on - strand, within GFF1752 at 401.575 kb on + strand, within GFF1752 at 401.581 kb on + strand, within GFF1752 at 401.581 kb on + strand, within GFF1752 at 401.581 kb on + strand, within GFF1752 at 401.582 kb on - strand, within GFF1752 at 401.661 kb on - strand, within GFF1752 at 401.670 kb on + strand, within GFF1752 at 401.725 kb on + strand, within GFF1752 at 401.726 kb on - strand, within GFF1752 at 401.726 kb on - strand, within GFF1752 at 401.899 kb on + strand, within GFF1752 at 401.946 kb on + strand, within GFF1752 at 401.946 kb on + strand, within GFF1752 at 402.012 kb on + strand, within GFF1752 at 402.013 kb on - strand, within GFF1752 at 402.013 kb on - strand, within GFF1752 at 402.064 kb on + strand, within GFF1752 at 402.065 kb on - strand, within GFF1752 at 402.065 kb on - strand, within GFF1752 at 402.142 kb on + strand, within GFF1752 at 402.143 kb on - strand, within GFF1752
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 400,407 + GFF1751 0.55 +0.2 400,408 - GFF1751 0.55 -1.4 400,408 - GFF1751 0.55 -0.8 400,408 - GFF1751 0.55 +1.5 400,468 - GFF1751 0.58 +0.0 400,589 + GFF1751 0.64 +0.2 400,589 + GFF1751 0.64 -0.5 400,589 + GFF1751 0.64 -0.4 400,589 + GFF1751 0.64 -0.2 400,590 - GFF1751 0.64 -0.4 400,590 - GFF1751 0.64 +1.3 400,590 - GFF1751 0.64 -1.5 400,590 - GFF1751 0.64 -0.5 401,172 + -1.4 401,172 + +0.5 401,173 - +0.5 401,173 - -1.1 401,548 + GFF1752 0.18 -0.8 401,549 - GFF1752 0.19 -0.5 401,549 - GFF1752 0.19 -0.3 401,549 - GFF1752 0.19 +0.6 401,549 - GFF1752 0.19 -1.1 401,554 + GFF1752 0.19 -0.0 401,554 + GFF1752 0.19 +0.9 401,554 + GFF1752 0.19 -0.2 401,555 - GFF1752 0.19 +0.9 401,575 + GFF1752 0.22 -0.3 401,581 + GFF1752 0.22 +0.8 401,581 + GFF1752 0.22 +1.1 401,581 + GFF1752 0.22 +1.3 401,582 - GFF1752 0.22 +1.5 401,661 - GFF1752 0.31 -0.1 401,670 + GFF1752 0.32 -1.5 401,725 + GFF1752 0.39 -0.1 401,726 - GFF1752 0.39 +0.3 401,726 - GFF1752 0.39 -0.5 401,899 + GFF1752 0.58 -0.2 401,946 + GFF1752 0.64 +0.9 401,946 + GFF1752 0.64 +0.5 402,012 + GFF1752 0.71 -0.5 402,013 - GFF1752 0.71 -0.2 402,013 - GFF1752 0.71 -0.3 402,064 + GFF1752 0.77 -2.6 402,065 - GFF1752 0.77 -0.8 402,065 - GFF1752 0.77 +0.0 402,142 + GFF1752 0.86 -0.7 402,143 - GFF1752 0.86 +0.6
Or see this region's nucleotide sequence