Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1741 and GFF1742 overlap by 8 nucleotides GFF1742 and GFF1743 overlap by 1 nucleotides GFF1743 and GFF1744 are separated by 24 nucleotides GFF1744 and GFF1745 are separated by 187 nucleotides
GFF1741 - Adaptive-response sensory-kinase SasA, at 390,228 to 391,745
GFF1741
GFF1742 - Response regulator rcp1, at 391,738 to 392,175
GFF1742
GFF1743 - Sensor histidine kinase RcsC, at 392,175 to 393,296
GFF1743
GFF1744 - Ferredoxin, 2Fe-2S, at 393,321 to 393,674
GFF1744
GFF1745 - Thiosulfate-binding protein, at 393,862 to 394,884
GFF1745
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 391.434 kb on + strand, within GFF1741 at 391.637 kb on + strand at 391.638 kb on - strand at 392.060 kb on - strand, within GFF1742 at 392.081 kb on - strand, within GFF1742 at 392.081 kb on - strand, within GFF1742 at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.397 kb on + strand, within GFF1743 at 392.397 kb on + strand, within GFF1743 at 392.397 kb on + strand, within GFF1743 at 392.398 kb on - strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.532 kb on + strand, within GFF1743 at 392.587 kb on + strand, within GFF1743 at 392.588 kb on - strand, within GFF1743 at 392.853 kb on + strand, within GFF1743 at 392.893 kb on - strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.962 kb on - strand, within GFF1743 at 392.962 kb on - strand, within GFF1743 at 392.962 kb on - strand, within GFF1743 at 393.419 kb on - strand, within GFF1744 at 393.437 kb on - strand, within GFF1744 at 393.628 kb on + strand, within GFF1744 at 393.629 kb on - strand, within GFF1744 at 393.765 kb on + strand at 393.766 kb on - strand at 394.058 kb on + strand, within GFF1745 at 394.073 kb on + strand, within GFF1745 at 394.074 kb on - strand, within GFF1745 at 394.074 kb on - strand, within GFF1745 at 394.190 kb on + strand, within GFF1745 at 394.295 kb on - strand, within GFF1745
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 391,434 + GFF1741 0.79 -0.1 391,637 + +0.1 391,638 - -0.1 392,060 - GFF1742 0.74 +0.6 392,081 - GFF1742 0.78 +1.2 392,081 - GFF1742 0.78 +0.6 392,253 + +0.2 392,253 + +0.7 392,253 + +0.0 392,253 + -0.3 392,253 + +0.9 392,253 + -1.6 392,397 + GFF1743 0.20 -0.1 392,397 + GFF1743 0.20 -0.7 392,397 + GFF1743 0.20 -0.6 392,398 - GFF1743 0.20 +0.0 392,469 + GFF1743 0.26 -0.6 392,469 + GFF1743 0.26 -0.7 392,469 + GFF1743 0.26 +1.2 392,469 + GFF1743 0.26 +0.6 392,470 - GFF1743 0.26 -0.3 392,470 - GFF1743 0.26 -2.6 392,470 - GFF1743 0.26 -0.9 392,470 - GFF1743 0.26 +1.0 392,470 - GFF1743 0.26 -1.0 392,532 + GFF1743 0.32 +0.4 392,587 + GFF1743 0.37 -1.4 392,588 - GFF1743 0.37 +0.0 392,853 + GFF1743 0.60 +1.3 392,893 - GFF1743 0.64 -0.4 392,961 + GFF1743 0.70 +1.0 392,961 + GFF1743 0.70 -0.7 392,961 + GFF1743 0.70 -0.4 392,961 + GFF1743 0.70 +0.1 392,962 - GFF1743 0.70 -0.1 392,962 - GFF1743 0.70 +0.7 392,962 - GFF1743 0.70 +0.7 393,419 - GFF1744 0.28 -2.4 393,437 - GFF1744 0.33 -0.3 393,628 + GFF1744 0.87 +0.3 393,629 - GFF1744 0.87 -0.3 393,765 + -0.4 393,766 - +0.9 394,058 + GFF1745 0.19 -0.5 394,073 + GFF1745 0.21 -0.1 394,074 - GFF1745 0.21 +0.2 394,074 - GFF1745 0.21 -0.2 394,190 + GFF1745 0.32 -0.4 394,295 - GFF1745 0.42 +0.2
Or see this region's nucleotide sequence