Strain Fitness in Xanthobacter sp. DMC5 around GFF1722

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1720 and GFF1721 overlap by 4 nucleotidesGFF1721 and GFF1722 are separated by 3 nucleotidesGFF1722 and GFF1723 are separated by 254 nucleotides GFF1720 - Ribonuclease HI, at 369,653 to 370,108 GFF1720 GFF1721 - Homoserine kinase, at 370,105 to 371,070 GFF1721 GFF1722 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 371,074 to 372,075 GFF1722 GFF1723 - hypothetical protein, at 372,330 to 373,034 GFF1723 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1at 372.173 kb on + strandat 372.251 kb on + strandat 372.251 kb on + strandat 372.251 kb on + strandat 372.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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372,173 + -1.8
372,251 + -0.8
372,251 + +1.0
372,251 + -0.4
372,251 + +0.3

Or see this region's nucleotide sequence