Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1711 and GFF1712 are separated by 167 nucleotides GFF1712 and GFF1713 overlap by 7 nucleotides GFF1713 and GFF1714 overlap by 4 nucleotides GFF1714 and GFF1715 are separated by 189 nucleotides
GFF1711 - hypothetical protein, at 359,851 to 360,339
GFF1711
GFF1712 - hypothetical protein, at 360,507 to 360,941
GFF1712
GFF1713 - Glyoxylate/hydroxypyruvate reductase A, at 360,935 to 361,897
GFF1713
GFF1714 - 3-dehydroquinate dehydratase, at 361,894 to 362,355
GFF1714
GFF1715 - hypothetical protein, at 362,545 to 362,922
GFF1715
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 360.147 kb on - strand, within GFF1711 at 360.149 kb on + strand, within GFF1711 at 360.150 kb on - strand, within GFF1711 at 360.150 kb on - strand, within GFF1711 at 360.150 kb on - strand, within GFF1711 at 360.470 kb on - strand at 360.470 kb on - strand at 360.470 kb on - strand at 360.471 kb on + strand at 360.471 kb on + strand at 360.472 kb on - strand at 360.472 kb on - strand at 360.844 kb on - strand, within GFF1712 at 360.844 kb on - strand, within GFF1712 at 360.987 kb on - strand at 361.345 kb on + strand, within GFF1713 at 361.345 kb on + strand, within GFF1713 at 361.345 kb on + strand, within GFF1713 at 361.345 kb on + strand, within GFF1713 at 361.346 kb on - strand, within GFF1713 at 361.491 kb on + strand, within GFF1713 at 361.491 kb on + strand, within GFF1713 at 361.491 kb on + strand, within GFF1713 at 361.491 kb on + strand, within GFF1713 at 361.492 kb on - strand, within GFF1713 at 361.492 kb on - strand, within GFF1713 at 361.492 kb on - strand, within GFF1713 at 361.492 kb on - strand, within GFF1713 at 361.738 kb on - strand, within GFF1713 at 361.738 kb on - strand, within GFF1713 at 361.850 kb on + strand at 361.860 kb on + strand at 361.860 kb on + strand at 361.861 kb on - strand at 362.112 kb on + strand, within GFF1714 at 362.113 kb on - strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.115 kb on - strand, within GFF1714 at 362.115 kb on - strand, within GFF1714 at 362.241 kb on - strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.309 kb on + strand at 362.310 kb on - strand at 362.310 kb on - strand at 362.310 kb on - strand at 362.459 kb on + strand at 362.558 kb on + strand at 362.746 kb on + strand, within GFF1715 at 362.746 kb on + strand, within GFF1715 at 362.746 kb on + strand, within GFF1715 at 362.861 kb on - strand, within GFF1715
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 360,147 - GFF1711 0.61 +0.1 360,149 + GFF1711 0.61 +1.6 360,150 - GFF1711 0.61 +0.4 360,150 - GFF1711 0.61 -1.6 360,150 - GFF1711 0.61 -2.1 360,470 - +0.5 360,470 - +0.5 360,470 - +1.1 360,471 + +1.3 360,471 + -0.7 360,472 - -1.9 360,472 - +0.4 360,844 - GFF1712 0.77 +1.2 360,844 - GFF1712 0.77 +0.0 360,987 - +0.9 361,345 + GFF1713 0.43 -0.3 361,345 + GFF1713 0.43 +0.6 361,345 + GFF1713 0.43 -0.2 361,345 + GFF1713 0.43 +0.2 361,346 - GFF1713 0.43 -2.1 361,491 + GFF1713 0.58 +0.4 361,491 + GFF1713 0.58 +0.3 361,491 + GFF1713 0.58 +0.6 361,491 + GFF1713 0.58 +0.4 361,492 - GFF1713 0.58 +0.2 361,492 - GFF1713 0.58 +0.6 361,492 - GFF1713 0.58 -0.7 361,492 - GFF1713 0.58 -1.3 361,738 - GFF1713 0.83 -1.0 361,738 - GFF1713 0.83 -1.7 361,850 + -0.5 361,860 + +1.0 361,860 + +0.1 361,861 - -0.2 362,112 + GFF1714 0.47 -0.4 362,113 - GFF1714 0.47 -0.6 362,114 + GFF1714 0.48 +0.4 362,114 + GFF1714 0.48 -1.1 362,114 + GFF1714 0.48 +1.1 362,114 + GFF1714 0.48 +0.2 362,115 - GFF1714 0.48 -0.7 362,115 - GFF1714 0.48 +0.5 362,241 - GFF1714 0.75 +0.1 362,285 + GFF1714 0.85 +0.2 362,285 + GFF1714 0.85 +2.8 362,285 + GFF1714 0.85 -0.4 362,285 + GFF1714 0.85 +0.3 362,285 + GFF1714 0.85 +0.7 362,286 - GFF1714 0.85 +0.1 362,286 - GFF1714 0.85 +0.2 362,286 - GFF1714 0.85 +0.3 362,286 - GFF1714 0.85 +0.0 362,309 + +0.4 362,310 - +0.3 362,310 - -2.6 362,310 - +1.7 362,459 + -0.3 362,558 + -1.9 362,746 + GFF1715 0.53 -1.2 362,746 + GFF1715 0.53 -0.0 362,746 + GFF1715 0.53 -0.8 362,861 - GFF1715 0.84 -2.2
Or see this region's nucleotide sequence