Strain Fitness in Xanthobacter sp. DMC5 around GFF171

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF170 and GFF171 are separated by 134 nucleotidesGFF171 and GFF172 are separated by 147 nucleotides GFF170 - Acetolactate synthase isozyme 3 large subunit, at 178,759 to 180,519 GFF170 GFF171 - Acetolactate synthase small subunit, at 180,654 to 181,169 GFF171 GFF172 - Ketol-acid reductoisomerase (NADP(+)), at 181,317 to 182,336 GFF172 Position (kb) 180 181 182Strain fitness (log2 ratio) -1 0 1 2at 180.567 kb on + strandat 180.568 kb on - strandat 181.295 kb on + strandat 181.295 kb on + strandat 181.304 kb on + strandat 181.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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180,567 + -0.6
180,568 - -0.8
181,295 + +1.2
181,295 + +1.9
181,304 + +0.6
181,304 + -0.3

Or see this region's nucleotide sequence