Strain Fitness in Xanthobacter sp. DMC5 around GFF1709

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1707 and GFF1708 are separated by 11 nucleotidesGFF1708 and GFF1709 overlap by 4 nucleotidesGFF1709 and GFF1710 are separated by 226 nucleotides GFF1707 - Putative aminoacrylate peracid reductase RutC, at 356,282 to 356,701 GFF1707 GFF1708 - NADH:FAD oxidoreductase, at 356,713 to 357,228 GFF1708 GFF1709 - 4-hydroxyphenylacetate 3-monooxygenase oxygenase component, at 357,225 to 358,679 GFF1709 GFF1710 - hypothetical protein, at 358,906 to 359,844 GFF1710 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 356.412 kb on + strand, within GFF1707at 356.412 kb on + strand, within GFF1707at 356.445 kb on + strand, within GFF1707at 356.445 kb on + strand, within GFF1707at 356.445 kb on + strand, within GFF1707at 356.445 kb on + strand, within GFF1707at 356.445 kb on + strand, within GFF1707at 356.445 kb on + strand, within GFF1707at 356.446 kb on - strand, within GFF1707at 356.446 kb on - strand, within GFF1707at 356.571 kb on + strand, within GFF1707at 356.596 kb on - strand, within GFF1707at 356.750 kb on + strandat 356.750 kb on + strandat 356.751 kb on - strandat 356.826 kb on - strand, within GFF1708at 357.254 kb on - strandat 357.310 kb on + strandat 357.310 kb on + strandat 357.380 kb on - strand, within GFF1709at 357.457 kb on + strand, within GFF1709at 357.458 kb on - strand, within GFF1709at 357.692 kb on - strand, within GFF1709at 357.793 kb on + strand, within GFF1709at 357.793 kb on + strand, within GFF1709at 357.793 kb on + strand, within GFF1709at 357.793 kb on + strand, within GFF1709at 357.811 kb on + strand, within GFF1709at 357.811 kb on + strand, within GFF1709at 357.812 kb on - strand, within GFF1709at 357.817 kb on + strand, within GFF1709at 357.818 kb on - strand, within GFF1709at 357.869 kb on - strand, within GFF1709at 357.875 kb on - strand, within GFF1709at 357.875 kb on - strand, within GFF1709at 357.926 kb on + strand, within GFF1709at 357.926 kb on + strand, within GFF1709at 357.926 kb on + strand, within GFF1709at 357.927 kb on - strand, within GFF1709at 357.958 kb on + strand, within GFF1709at 357.958 kb on + strand, within GFF1709at 357.959 kb on - strand, within GFF1709at 358.096 kb on + strand, within GFF1709at 358.096 kb on + strand, within GFF1709at 358.097 kb on - strand, within GFF1709at 358.097 kb on - strand, within GFF1709at 358.129 kb on + strand, within GFF1709at 358.130 kb on - strand, within GFF1709at 358.504 kb on + strand, within GFF1709at 358.504 kb on + strand, within GFF1709at 358.505 kb on - strand, within GFF1709at 358.505 kb on - strand, within GFF1709at 358.505 kb on - strand, within GFF1709at 358.505 kb on - strand, within GFF1709at 358.505 kb on - strand, within GFF1709at 358.547 kb on - strandat 358.547 kb on - strandat 358.547 kb on - strandat 358.658 kb on - strandat 358.745 kb on + strandat 358.877 kb on + strandat 358.933 kb on + strandat 358.933 kb on + strandat 358.933 kb on + strandat 358.933 kb on + strandat 358.934 kb on - strandat 358.934 kb on - strandat 358.934 kb on - strandat 359.104 kb on + strand, within GFF1710at 359.104 kb on + strand, within GFF1710at 359.104 kb on + strand, within GFF1710at 359.105 kb on - strand, within GFF1710at 359.105 kb on - strand, within GFF1710at 359.105 kb on - strand, within GFF1710at 359.353 kb on + strand, within GFF1710at 359.353 kb on + strand, within GFF1710at 359.354 kb on - strand, within GFF1710at 359.354 kb on - strand, within GFF1710at 359.354 kb on - strand, within GFF1710at 359.354 kb on - strand, within GFF1710at 359.494 kb on + strand, within GFF1710at 359.518 kb on + strand, within GFF1710at 359.581 kb on + strand, within GFF1710at 359.659 kb on + strand, within GFF1710at 359.659 kb on + strand, within GFF1710at 359.660 kb on - strand, within GFF1710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
356,412 + GFF1707 0.31 +0.0
356,412 + GFF1707 0.31 +0.0
356,445 + GFF1707 0.39 +0.0
356,445 + GFF1707 0.39 -0.8
356,445 + GFF1707 0.39 +0.0
356,445 + GFF1707 0.39 -0.5
356,445 + GFF1707 0.39 -1.8
356,445 + GFF1707 0.39 +0.7
356,446 - GFF1707 0.39 -0.5
356,446 - GFF1707 0.39 -0.5
356,571 + GFF1707 0.69 +0.4
356,596 - GFF1707 0.75 +0.7
356,750 + -0.6
356,750 + -0.6
356,751 - +0.0
356,826 - GFF1708 0.22 -0.8
357,254 - +0.5
357,310 + +0.0
357,310 + -0.9
357,380 - GFF1709 0.11 -0.7
357,457 + GFF1709 0.16 +0.3
357,458 - GFF1709 0.16 -0.4
357,692 - GFF1709 0.32 +1.3
357,793 + GFF1709 0.39 +0.0
357,793 + GFF1709 0.39 -0.5
357,793 + GFF1709 0.39 +0.1
357,793 + GFF1709 0.39 -0.4
357,811 + GFF1709 0.40 -0.2
357,811 + GFF1709 0.40 +0.2
357,812 - GFF1709 0.40 +1.9
357,817 + GFF1709 0.41 -0.4
357,818 - GFF1709 0.41 -1.3
357,869 - GFF1709 0.44 -0.9
357,875 - GFF1709 0.45 +0.2
357,875 - GFF1709 0.45 -1.1
357,926 + GFF1709 0.48 +0.3
357,926 + GFF1709 0.48 -1.5
357,926 + GFF1709 0.48 +0.7
357,927 - GFF1709 0.48 +0.5
357,958 + GFF1709 0.50 +0.2
357,958 + GFF1709 0.50 +0.3
357,959 - GFF1709 0.50 +0.2
358,096 + GFF1709 0.60 -0.6
358,096 + GFF1709 0.60 +0.5
358,097 - GFF1709 0.60 -0.1
358,097 - GFF1709 0.60 -0.8
358,129 + GFF1709 0.62 +0.4
358,130 - GFF1709 0.62 +0.7
358,504 + GFF1709 0.88 -1.5
358,504 + GFF1709 0.88 +0.2
358,505 - GFF1709 0.88 +0.4
358,505 - GFF1709 0.88 +0.7
358,505 - GFF1709 0.88 -1.1
358,505 - GFF1709 0.88 -2.3
358,505 - GFF1709 0.88 -0.8
358,547 - -0.1
358,547 - -2.0
358,547 - +0.0
358,658 - -0.1
358,745 + +0.3
358,877 + -0.3
358,933 + -0.5
358,933 + +0.2
358,933 + -1.8
358,933 + -1.3
358,934 - -0.1
358,934 - -0.4
358,934 - -0.5
359,104 + GFF1710 0.21 -0.4
359,104 + GFF1710 0.21 +1.3
359,104 + GFF1710 0.21 -0.1
359,105 - GFF1710 0.21 -1.7
359,105 - GFF1710 0.21 -0.7
359,105 - GFF1710 0.21 -1.1
359,353 + GFF1710 0.48 +0.2
359,353 + GFF1710 0.48 -1.8
359,354 - GFF1710 0.48 -1.4
359,354 - GFF1710 0.48 -0.4
359,354 - GFF1710 0.48 +0.5
359,354 - GFF1710 0.48 -0.8
359,494 + GFF1710 0.63 -0.6
359,518 + GFF1710 0.65 -1.2
359,581 + GFF1710 0.72 +0.8
359,659 + GFF1710 0.80 +0.7
359,659 + GFF1710 0.80 +1.1
359,660 - GFF1710 0.80 +0.0

Or see this region's nucleotide sequence