Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1706 and GFF1707 are separated by 229 nucleotides GFF1707 and GFF1708 are separated by 11 nucleotides GFF1708 and GFF1709 overlap by 4 nucleotides
GFF1706 - Spermidine/putrescine-binding periplasmic protein, at 355,021 to 356,052
GFF1706
GFF1707 - Putative aminoacrylate peracid reductase RutC, at 356,282 to 356,701
GFF1707
GFF1708 - NADH:FAD oxidoreductase, at 356,713 to 357,228
GFF1708
GFF1709 - 4-hydroxyphenylacetate 3-monooxygenase oxygenase component, at 357,225 to 358,679
GFF1709
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.883 kb on + strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 356.412 kb on + strand, within GFF1707 at 356.412 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.446 kb on - strand, within GFF1707 at 356.446 kb on - strand, within GFF1707 at 356.571 kb on + strand, within GFF1707 at 356.596 kb on - strand, within GFF1707 at 356.750 kb on + strand at 356.750 kb on + strand at 356.751 kb on - strand at 356.826 kb on - strand, within GFF1708 at 357.254 kb on - strand at 357.310 kb on + strand at 357.310 kb on + strand at 357.380 kb on - strand, within GFF1709 at 357.457 kb on + strand, within GFF1709 at 357.458 kb on - strand, within GFF1709 at 357.692 kb on - strand, within GFF1709 at 357.793 kb on + strand, within GFF1709 at 357.793 kb on + strand, within GFF1709 at 357.793 kb on + strand, within GFF1709 at 357.793 kb on + strand, within GFF1709 at 357.811 kb on + strand, within GFF1709 at 357.811 kb on + strand, within GFF1709 at 357.812 kb on - strand, within GFF1709 at 357.817 kb on + strand, within GFF1709 at 357.818 kb on - strand, within GFF1709 at 357.869 kb on - strand, within GFF1709 at 357.875 kb on - strand, within GFF1709 at 357.875 kb on - strand, within GFF1709 at 357.926 kb on + strand, within GFF1709 at 357.926 kb on + strand, within GFF1709 at 357.926 kb on + strand, within GFF1709 at 357.927 kb on - strand, within GFF1709 at 357.958 kb on + strand, within GFF1709 at 357.958 kb on + strand, within GFF1709 at 357.959 kb on - strand, within GFF1709 at 358.096 kb on + strand, within GFF1709 at 358.096 kb on + strand, within GFF1709 at 358.097 kb on - strand, within GFF1709 at 358.097 kb on - strand, within GFF1709 at 358.129 kb on + strand, within GFF1709 at 358.130 kb on - strand, within GFF1709
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 355,883 + GFF1706 0.84 -1.5 355,883 + GFF1706 0.84 +0.3 355,883 + GFF1706 0.84 +0.3 355,883 + GFF1706 0.84 -0.7 355,884 - GFF1706 0.84 +0.0 355,884 - GFF1706 0.84 -1.5 355,884 - GFF1706 0.84 -2.1 355,884 - GFF1706 0.84 +0.7 356,412 + GFF1707 0.31 +0.0 356,412 + GFF1707 0.31 +0.0 356,445 + GFF1707 0.39 +0.0 356,445 + GFF1707 0.39 -0.8 356,445 + GFF1707 0.39 +0.0 356,445 + GFF1707 0.39 -0.5 356,445 + GFF1707 0.39 -1.8 356,445 + GFF1707 0.39 +0.7 356,446 - GFF1707 0.39 -0.5 356,446 - GFF1707 0.39 -0.5 356,571 + GFF1707 0.69 +0.4 356,596 - GFF1707 0.75 +0.7 356,750 + -0.6 356,750 + -0.6 356,751 - +0.0 356,826 - GFF1708 0.22 -0.8 357,254 - +0.5 357,310 + +0.0 357,310 + -0.9 357,380 - GFF1709 0.11 -0.7 357,457 + GFF1709 0.16 +0.3 357,458 - GFF1709 0.16 -0.4 357,692 - GFF1709 0.32 +1.3 357,793 + GFF1709 0.39 +0.0 357,793 + GFF1709 0.39 -0.5 357,793 + GFF1709 0.39 +0.1 357,793 + GFF1709 0.39 -0.4 357,811 + GFF1709 0.40 -0.2 357,811 + GFF1709 0.40 +0.2 357,812 - GFF1709 0.40 +1.9 357,817 + GFF1709 0.41 -0.4 357,818 - GFF1709 0.41 -1.3 357,869 - GFF1709 0.44 -0.9 357,875 - GFF1709 0.45 +0.2 357,875 - GFF1709 0.45 -1.1 357,926 + GFF1709 0.48 +0.3 357,926 + GFF1709 0.48 -1.5 357,926 + GFF1709 0.48 +0.7 357,927 - GFF1709 0.48 +0.5 357,958 + GFF1709 0.50 +0.2 357,958 + GFF1709 0.50 +0.3 357,959 - GFF1709 0.50 +0.2 358,096 + GFF1709 0.60 -0.6 358,096 + GFF1709 0.60 +0.5 358,097 - GFF1709 0.60 -0.1 358,097 - GFF1709 0.60 -0.8 358,129 + GFF1709 0.62 +0.4 358,130 - GFF1709 0.62 +0.7
Or see this region's nucleotide sequence