Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1705 and GFF1706 are separated by 187 nucleotides GFF1706 and GFF1707 are separated by 229 nucleotides GFF1707 and GFF1708 are separated by 11 nucleotides
GFF1705 - hypothetical protein, at 353,982 to 354,833
GFF1705
GFF1706 - Spermidine/putrescine-binding periplasmic protein, at 355,021 to 356,052
GFF1706
GFF1707 - Putative aminoacrylate peracid reductase RutC, at 356,282 to 356,701
GFF1707
GFF1708 - NADH:FAD oxidoreductase, at 356,713 to 357,228
GFF1708
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 354.116 kb on - strand, within GFF1705 at 354.116 kb on - strand, within GFF1705 at 354.299 kb on - strand, within GFF1705 at 354.484 kb on + strand, within GFF1705 at 354.484 kb on + strand, within GFF1705 at 354.484 kb on + strand, within GFF1705 at 354.485 kb on - strand, within GFF1705 at 354.485 kb on - strand, within GFF1705 at 354.528 kb on - strand, within GFF1705 at 354.528 kb on - strand, within GFF1705 at 354.658 kb on + strand, within GFF1705 at 354.659 kb on - strand, within GFF1705 at 354.659 kb on - strand, within GFF1705 at 354.727 kb on + strand, within GFF1705 at 354.727 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.742 kb on + strand, within GFF1705 at 354.974 kb on - strand at 355.341 kb on - strand, within GFF1706 at 355.367 kb on + strand, within GFF1706 at 355.367 kb on + strand, within GFF1706 at 355.368 kb on - strand, within GFF1706 at 355.370 kb on + strand, within GFF1706 at 355.370 kb on + strand, within GFF1706 at 355.371 kb on - strand, within GFF1706 at 355.371 kb on - strand, within GFF1706 at 355.371 kb on - strand, within GFF1706 at 355.448 kb on + strand, within GFF1706 at 355.448 kb on + strand, within GFF1706 at 355.449 kb on - strand, within GFF1706 at 355.449 kb on - strand, within GFF1706 at 355.449 kb on - strand, within GFF1706 at 355.667 kb on + strand, within GFF1706 at 355.667 kb on + strand, within GFF1706 at 355.667 kb on + strand, within GFF1706 at 355.668 kb on - strand, within GFF1706 at 355.668 kb on - strand, within GFF1706 at 355.668 kb on - strand, within GFF1706 at 355.668 kb on - strand, within GFF1706 at 355.668 kb on - strand, within GFF1706 at 355.668 kb on - strand, within GFF1706 at 355.673 kb on + strand, within GFF1706 at 355.673 kb on + strand, within GFF1706 at 355.673 kb on + strand, within GFF1706 at 355.674 kb on - strand, within GFF1706 at 355.674 kb on - strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.883 kb on + strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 355.884 kb on - strand, within GFF1706 at 356.412 kb on + strand, within GFF1707 at 356.412 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.445 kb on + strand, within GFF1707 at 356.446 kb on - strand, within GFF1707 at 356.446 kb on - strand, within GFF1707 at 356.571 kb on + strand, within GFF1707 at 356.596 kb on - strand, within GFF1707 at 356.750 kb on + strand at 356.750 kb on + strand at 356.751 kb on - strand at 356.826 kb on - strand, within GFF1708
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 354,116 - GFF1705 0.16 +0.4 354,116 - GFF1705 0.16 -0.5 354,299 - GFF1705 0.37 -0.9 354,484 + GFF1705 0.59 -0.4 354,484 + GFF1705 0.59 -0.3 354,484 + GFF1705 0.59 -0.5 354,485 - GFF1705 0.59 +1.6 354,485 - GFF1705 0.59 +1.0 354,528 - GFF1705 0.64 +0.5 354,528 - GFF1705 0.64 -0.7 354,658 + GFF1705 0.79 -0.5 354,659 - GFF1705 0.79 -0.6 354,659 - GFF1705 0.79 +0.1 354,727 + GFF1705 0.87 +0.5 354,727 + GFF1705 0.87 -0.9 354,742 + GFF1705 0.89 -0.8 354,742 + GFF1705 0.89 +0.1 354,742 + GFF1705 0.89 -1.1 354,742 + GFF1705 0.89 +0.1 354,742 + GFF1705 0.89 -0.3 354,742 + GFF1705 0.89 -0.1 354,742 + GFF1705 0.89 +0.0 354,974 - +0.4 355,341 - GFF1706 0.31 -1.9 355,367 + GFF1706 0.34 -0.1 355,367 + GFF1706 0.34 +0.8 355,368 - GFF1706 0.34 +0.3 355,370 + GFF1706 0.34 -0.7 355,370 + GFF1706 0.34 -0.5 355,371 - GFF1706 0.34 -1.5 355,371 - GFF1706 0.34 -0.9 355,371 - GFF1706 0.34 -1.6 355,448 + GFF1706 0.41 -0.8 355,448 + GFF1706 0.41 +0.7 355,449 - GFF1706 0.41 -0.1 355,449 - GFF1706 0.41 -0.3 355,449 - GFF1706 0.41 -1.0 355,667 + GFF1706 0.63 +0.2 355,667 + GFF1706 0.63 -0.2 355,667 + GFF1706 0.63 +1.3 355,668 - GFF1706 0.63 -0.0 355,668 - GFF1706 0.63 +0.1 355,668 - GFF1706 0.63 -0.5 355,668 - GFF1706 0.63 +0.2 355,668 - GFF1706 0.63 -1.2 355,668 - GFF1706 0.63 +0.9 355,673 + GFF1706 0.63 +0.2 355,673 + GFF1706 0.63 -1.0 355,673 + GFF1706 0.63 -1.8 355,674 - GFF1706 0.63 +0.7 355,674 - GFF1706 0.63 +0.0 355,883 + GFF1706 0.84 -1.5 355,883 + GFF1706 0.84 +0.3 355,883 + GFF1706 0.84 +0.3 355,883 + GFF1706 0.84 -0.7 355,884 - GFF1706 0.84 +0.0 355,884 - GFF1706 0.84 -1.5 355,884 - GFF1706 0.84 -2.1 355,884 - GFF1706 0.84 +0.7 356,412 + GFF1707 0.31 +0.0 356,412 + GFF1707 0.31 +0.0 356,445 + GFF1707 0.39 +0.0 356,445 + GFF1707 0.39 -0.8 356,445 + GFF1707 0.39 +0.0 356,445 + GFF1707 0.39 -0.5 356,445 + GFF1707 0.39 -1.8 356,445 + GFF1707 0.39 +0.7 356,446 - GFF1707 0.39 -0.5 356,446 - GFF1707 0.39 -0.5 356,571 + GFF1707 0.69 +0.4 356,596 - GFF1707 0.75 +0.7 356,750 + -0.6 356,750 + -0.6 356,751 - +0.0 356,826 - GFF1708 0.22 -0.8
Or see this region's nucleotide sequence