Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF169 and GFF170 are separated by 492 nucleotides GFF170 and GFF171 are separated by 134 nucleotides GFF171 and GFF172 are separated by 147 nucleotides
GFF169 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 177,481 to 178,266
GFF169
GFF170 - Acetolactate synthase isozyme 3 large subunit, at 178,759 to 180,519
GFF170
GFF171 - Acetolactate synthase small subunit, at 180,654 to 181,169
GFF171
GFF172 - Ketol-acid reductoisomerase (NADP(+)), at 181,317 to 182,336
GFF172
Position (kb) 178
179
180
181 Strain fitness (log2 ratio) -1
0
1
2 at 177.778 kb on - strand, within GFF169 at 177.985 kb on + strand, within GFF169 at 177.986 kb on - strand, within GFF169 at 178.232 kb on + strand at 178.232 kb on + strand at 178.354 kb on - strand at 178.354 kb on - strand at 178.379 kb on - strand at 178.406 kb on - strand at 178.701 kb on + strand at 178.714 kb on + strand at 180.567 kb on + strand at 180.568 kb on - strand at 181.295 kb on + strand at 181.295 kb on + strand at 181.304 kb on + strand at 181.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 177,778 - GFF169 0.38 +0.3 177,985 + GFF169 0.64 -0.0 177,986 - GFF169 0.64 +0.4 178,232 + +1.6 178,232 + -0.4 178,354 - +0.5 178,354 - +0.5 178,379 - -0.8 178,406 - +0.4 178,701 + +0.7 178,714 + -1.4 180,567 + -0.6 180,568 - -0.8 181,295 + +1.2 181,295 + +1.9 181,304 + +0.6 181,304 + -0.3
Or see this region's nucleotide sequence