Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1687 and GFF1688 are separated by 91 nucleotides GFF1688 and GFF1689 are separated by 95 nucleotides GFF1689 and GFF1690 are separated by 323 nucleotides
GFF1687 - hypothetical protein, at 338,521 to 338,727
GFF1687
GFF1688 - Peroxiredoxin, at 338,819 to 339,304
GFF1688
GFF1689 - hypothetical protein, at 339,400 to 340,152
GFF1689
GFF1690 - hypothetical protein, at 340,476 to 341,093
GFF1690
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1 at 338.461 kb on + strand at 338.758 kb on + strand at 339.135 kb on + strand, within GFF1688 at 339.318 kb on + strand at 339.318 kb on + strand at 339.318 kb on + strand at 339.318 kb on + strand at 339.347 kb on + strand at 340.301 kb on - strand at 340.305 kb on + strand at 340.305 kb on + strand at 340.306 kb on - strand at 340.306 kb on - strand at 340.306 kb on - strand at 340.311 kb on + strand at 340.590 kb on + strand, within GFF1690 at 340.590 kb on + strand, within GFF1690 at 340.590 kb on + strand, within GFF1690 at 340.590 kb on + strand, within GFF1690 at 340.591 kb on - strand, within GFF1690 at 340.591 kb on - strand, within GFF1690 at 340.591 kb on - strand, within GFF1690 at 340.591 kb on - strand, within GFF1690 at 340.797 kb on + strand, within GFF1690 at 340.797 kb on + strand, within GFF1690 at 340.797 kb on + strand, within GFF1690 at 340.798 kb on - strand, within GFF1690 at 340.798 kb on - strand, within GFF1690
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 338,461 + -1.8 338,758 + +0.0 339,135 + GFF1688 0.65 +0.3 339,318 + +0.5 339,318 + -0.1 339,318 + -1.2 339,318 + -0.1 339,347 + +0.2 340,301 - -1.3 340,305 + -2.0 340,305 + -1.5 340,306 - -1.0 340,306 - +0.3 340,306 - -0.4 340,311 + -0.1 340,590 + GFF1690 0.18 -1.8 340,590 + GFF1690 0.18 -1.1 340,590 + GFF1690 0.18 +0.9 340,590 + GFF1690 0.18 +0.0 340,591 - GFF1690 0.19 -0.2 340,591 - GFF1690 0.19 +1.7 340,591 - GFF1690 0.19 -1.2 340,591 - GFF1690 0.19 -0.1 340,797 + GFF1690 0.52 +0.3 340,797 + GFF1690 0.52 -2.2 340,797 + GFF1690 0.52 +0.0 340,798 - GFF1690 0.52 +0.5 340,798 - GFF1690 0.52 +1.3
Or see this region's nucleotide sequence