Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1681 and GFF1682 are separated by 25 nucleotides GFF1682 and GFF1683 are separated by 86 nucleotides GFF1683 and GFF1684 overlap by 4 nucleotides GFF1684 and GFF1685 are separated by 6 nucleotides
GFF1681 - hypothetical protein, at 334,473 to 334,784
GFF1681
GFF1682 - hypothetical protein, at 334,810 to 335,154
GFF1682
GFF1683 - hypothetical protein, at 335,241 to 335,705
GFF1683
GFF1684 - hypothetical protein, at 335,702 to 336,187
GFF1684
GFF1685 - ABC transporter ATP-binding protein uup, at 336,194 to 338,023
GFF1685
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.702 kb on - strand, within GFF1681 at 334.879 kb on + strand, within GFF1682 at 334.880 kb on - strand, within GFF1682 at 334.880 kb on - strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.065 kb on + strand, within GFF1682 at 335.708 kb on + strand at 335.708 kb on + strand at 335.708 kb on + strand at 335.708 kb on + strand at 335.709 kb on - strand at 335.709 kb on - strand at 335.709 kb on - strand at 335.709 kb on - strand at 336.023 kb on + strand, within GFF1684 at 336.024 kb on - strand, within GFF1684 at 336.039 kb on + strand, within GFF1684 at 336.040 kb on - strand, within GFF1684 at 336.040 kb on - strand, within GFF1684 at 336.041 kb on - strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.318 kb on + strand at 336.318 kb on + strand at 336.319 kb on - strand at 336.319 kb on - strand at 336.319 kb on - strand at 336.576 kb on + strand, within GFF1685 at 336.576 kb on + strand, within GFF1685 at 336.865 kb on - strand, within GFF1685
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 334,702 - GFF1681 0.73 +0.2 334,879 + GFF1682 0.20 -0.0 334,880 - GFF1682 0.20 -0.0 334,880 - GFF1682 0.20 -0.3 335,032 + GFF1682 0.64 +0.5 335,032 + GFF1682 0.64 +0.7 335,032 + GFF1682 0.64 -1.3 335,032 + GFF1682 0.64 -2.5 335,033 - GFF1682 0.65 -0.4 335,033 - GFF1682 0.65 +0.2 335,033 - GFF1682 0.65 +1.8 335,033 - GFF1682 0.65 -0.0 335,033 - GFF1682 0.65 +0.5 335,065 + GFF1682 0.74 -0.2 335,708 + +0.0 335,708 + -0.9 335,708 + -0.7 335,708 + -1.0 335,709 - -0.7 335,709 - +1.8 335,709 - -0.4 335,709 - -2.1 336,023 + GFF1684 0.66 +0.5 336,024 - GFF1684 0.66 -1.2 336,039 + GFF1684 0.69 -1.1 336,040 - GFF1684 0.70 -0.1 336,040 - GFF1684 0.70 -0.1 336,041 - GFF1684 0.70 -0.7 336,110 + GFF1684 0.84 +1.0 336,110 + GFF1684 0.84 +0.7 336,110 + GFF1684 0.84 -0.4 336,110 + GFF1684 0.84 +0.8 336,110 + GFF1684 0.84 -1.1 336,318 + +0.7 336,318 + +1.2 336,319 - -1.0 336,319 - -0.9 336,319 - +0.3 336,576 + GFF1685 0.21 -0.1 336,576 + GFF1685 0.21 +0.6 336,865 - GFF1685 0.37 +0.6
Or see this region's nucleotide sequence