Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1675 and GFF1676 are separated by 177 nucleotides GFF1676 and GFF1677 are separated by 78 nucleotides GFF1677 and GFF1678 are separated by 150 nucleotides
GFF1675 - Thiosulfate dehydrogenase, at 329,343 to 330,404
GFF1675
GFF1676 - 50S ribosomal protein L25, at 330,582 to 331,184
GFF1676
GFF1677 - Peptidyl-tRNA hydrolase, at 331,263 to 331,871
GFF1677
GFF1678 - Ribosome-binding ATPase YchF, at 332,022 to 333,119
GFF1678
Position (kb) 330
331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 329.788 kb on + strand, within GFF1675 at 329.788 kb on + strand, within GFF1675 at 329.902 kb on + strand, within GFF1675 at 329.903 kb on - strand, within GFF1675 at 330.031 kb on + strand, within GFF1675 at 330.031 kb on + strand, within GFF1675 at 330.190 kb on + strand, within GFF1675 at 330.191 kb on - strand, within GFF1675 at 330.209 kb on - strand, within GFF1675 at 330.209 kb on - strand, within GFF1675 at 330.209 kb on - strand, within GFF1675 at 330.209 kb on - strand, within GFF1675 at 330.560 kb on + strand at 330.560 kb on + strand at 330.563 kb on + strand at 330.563 kb on + strand at 330.563 kb on + strand at 331.971 kb on - strand at 331.971 kb on - strand at 331.971 kb on - strand at 331.971 kb on - strand at 331.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 329,788 + GFF1675 0.42 -1.1 329,788 + GFF1675 0.42 -0.8 329,902 + GFF1675 0.53 +0.0 329,903 - GFF1675 0.53 +1.1 330,031 + GFF1675 0.65 -0.6 330,031 + GFF1675 0.65 +1.0 330,190 + GFF1675 0.80 -2.9 330,191 - GFF1675 0.80 -0.4 330,209 - GFF1675 0.82 -0.2 330,209 - GFF1675 0.82 +0.3 330,209 - GFF1675 0.82 -0.5 330,209 - GFF1675 0.82 -0.0 330,560 + +0.6 330,560 + -1.9 330,563 + -0.1 330,563 + -1.3 330,563 + +0.0 331,971 - -0.7 331,971 - -1.3 331,971 - +0.9 331,971 - -1.4 331,971 - -1.3
Or see this region's nucleotide sequence