Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1664 and GFF1665 are separated by 5 nucleotides GFF1665 and GFF1666 are separated by 4 nucleotides GFF1666 and GFF1667 are separated by 73 nucleotides
GFF1664 - Bicarbonate transport ATP-binding protein CmpD, at 319,194 to 320,123
GFF1664
GFF1665 - Nitrate import permease protein NrtB, at 320,129 to 320,968
GFF1665
GFF1666 - hypothetical protein, at 320,973 to 322,337
GFF1666
GFF1667 - Rhodocoxin reductase, at 322,411 to 323,589
GFF1667
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -1
0
1
2 at 320.060 kb on - strand at 320.098 kb on + strand at 320.099 kb on - strand at 320.099 kb on - strand at 320.263 kb on - strand, within GFF1665 at 320.263 kb on - strand, within GFF1665 at 320.496 kb on + strand, within GFF1665 at 320.538 kb on + strand, within GFF1665 at 320.538 kb on + strand, within GFF1665 at 320.539 kb on - strand, within GFF1665 at 320.611 kb on - strand, within GFF1665 at 320.700 kb on + strand, within GFF1665 at 320.700 kb on + strand, within GFF1665 at 320.701 kb on - strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.746 kb on - strand, within GFF1665 at 320.847 kb on + strand, within GFF1665 at 320.847 kb on + strand, within GFF1665 at 321.004 kb on + strand at 321.005 kb on - strand at 321.042 kb on + strand at 321.145 kb on + strand, within GFF1666 at 321.145 kb on + strand, within GFF1666 at 321.146 kb on - strand, within GFF1666 at 321.277 kb on + strand, within GFF1666 at 321.277 kb on + strand, within GFF1666 at 321.277 kb on + strand, within GFF1666 at 321.325 kb on + strand, within GFF1666 at 321.325 kb on + strand, within GFF1666 at 321.382 kb on + strand, within GFF1666 at 321.382 kb on + strand, within GFF1666 at 321.383 kb on - strand, within GFF1666 at 321.422 kb on - strand, within GFF1666 at 321.426 kb on - strand, within GFF1666 at 321.670 kb on + strand, within GFF1666 at 321.670 kb on + strand, within GFF1666 at 321.682 kb on + strand, within GFF1666 at 321.682 kb on + strand, within GFF1666 at 321.683 kb on - strand, within GFF1666 at 321.886 kb on + strand, within GFF1666 at 321.886 kb on + strand, within GFF1666 at 321.886 kb on + strand, within GFF1666 at 321.887 kb on - strand, within GFF1666 at 321.965 kb on + strand, within GFF1666 at 321.965 kb on + strand, within GFF1666 at 321.966 kb on - strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.968 kb on - strand, within GFF1666 at 322.100 kb on - strand, within GFF1666 at 322.210 kb on + strand at 322.211 kb on - strand at 322.474 kb on - strand at 322.613 kb on + strand, within GFF1667 at 322.614 kb on - strand, within GFF1667 at 322.614 kb on - strand, within GFF1667 at 322.646 kb on + strand, within GFF1667 at 322.775 kb on + strand, within GFF1667 at 322.775 kb on + strand, within GFF1667 at 322.776 kb on - strand, within GFF1667 at 322.776 kb on - strand, within GFF1667 at 322.776 kb on - strand, within GFF1667 at 323.127 kb on + strand, within GFF1667 at 323.127 kb on + strand, within GFF1667 at 323.129 kb on + strand, within GFF1667 at 323.129 kb on + strand, within GFF1667 at 323.130 kb on - strand, within GFF1667
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 320,060 - -0.0 320,098 + +0.3 320,099 - +0.7 320,099 - -0.9 320,263 - GFF1665 0.16 +1.2 320,263 - GFF1665 0.16 -0.3 320,496 + GFF1665 0.44 -0.9 320,538 + GFF1665 0.49 +1.3 320,538 + GFF1665 0.49 -0.4 320,539 - GFF1665 0.49 -0.3 320,611 - GFF1665 0.57 -0.5 320,700 + GFF1665 0.68 +1.6 320,700 + GFF1665 0.68 -0.8 320,701 - GFF1665 0.68 -0.0 320,745 + GFF1665 0.73 +0.0 320,745 + GFF1665 0.73 -0.6 320,745 + GFF1665 0.73 -0.0 320,745 + GFF1665 0.73 +0.0 320,746 - GFF1665 0.73 -0.1 320,847 + GFF1665 0.85 -0.4 320,847 + GFF1665 0.85 -0.5 321,004 + -0.0 321,005 - -0.3 321,042 + -0.3 321,145 + GFF1666 0.13 +2.3 321,145 + GFF1666 0.13 -1.4 321,146 - GFF1666 0.13 -0.6 321,277 + GFF1666 0.22 +0.3 321,277 + GFF1666 0.22 +0.0 321,277 + GFF1666 0.22 -0.3 321,325 + GFF1666 0.26 -0.1 321,325 + GFF1666 0.26 +0.9 321,382 + GFF1666 0.30 +1.6 321,382 + GFF1666 0.30 -0.6 321,383 - GFF1666 0.30 -1.3 321,422 - GFF1666 0.33 -1.0 321,426 - GFF1666 0.33 -0.9 321,670 + GFF1666 0.51 +0.5 321,670 + GFF1666 0.51 +0.1 321,682 + GFF1666 0.52 -0.1 321,682 + GFF1666 0.52 -0.8 321,683 - GFF1666 0.52 -0.3 321,886 + GFF1666 0.67 -0.1 321,886 + GFF1666 0.67 -0.2 321,886 + GFF1666 0.67 +0.9 321,887 - GFF1666 0.67 +1.0 321,965 + GFF1666 0.73 +1.0 321,965 + GFF1666 0.73 +0.3 321,966 - GFF1666 0.73 -0.5 321,967 + GFF1666 0.73 +0.8 321,967 + GFF1666 0.73 -0.6 321,967 + GFF1666 0.73 -0.6 321,967 + GFF1666 0.73 +0.4 321,967 + GFF1666 0.73 -0.3 321,967 + GFF1666 0.73 -0.8 321,968 - GFF1666 0.73 +1.1 322,100 - GFF1666 0.83 +0.1 322,210 + +0.0 322,211 - +0.0 322,474 - -0.3 322,613 + GFF1667 0.17 -0.6 322,614 - GFF1667 0.17 +0.4 322,614 - GFF1667 0.17 -1.2 322,646 + GFF1667 0.20 -0.5 322,775 + GFF1667 0.31 +0.2 322,775 + GFF1667 0.31 -0.1 322,776 - GFF1667 0.31 -0.4 322,776 - GFF1667 0.31 +0.2 322,776 - GFF1667 0.31 -0.5 323,127 + GFF1667 0.61 -0.2 323,127 + GFF1667 0.61 +1.6 323,129 + GFF1667 0.61 +0.4 323,129 + GFF1667 0.61 +0.8 323,130 - GFF1667 0.61 +0.5
Or see this region's nucleotide sequence