Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1663 and GFF1664 are separated by 44 nucleotides GFF1664 and GFF1665 are separated by 5 nucleotides GFF1665 and GFF1666 are separated by 4 nucleotides
GFF1663 - Cyanate hydratase, at 318,661 to 319,149
GFF1663
GFF1664 - Bicarbonate transport ATP-binding protein CmpD, at 319,194 to 320,123
GFF1664
GFF1665 - Nitrate import permease protein NrtB, at 320,129 to 320,968
GFF1665
GFF1666 - hypothetical protein, at 320,973 to 322,337
GFF1666
Position (kb) 320
321 Strain fitness (log2 ratio) -1
0
1
2 at 319.294 kb on + strand, within GFF1664 at 319.370 kb on - strand, within GFF1664 at 319.372 kb on + strand, within GFF1664 at 319.372 kb on + strand, within GFF1664 at 319.372 kb on + strand, within GFF1664 at 319.373 kb on - strand, within GFF1664 at 319.373 kb on - strand, within GFF1664 at 319.373 kb on - strand, within GFF1664 at 319.489 kb on + strand, within GFF1664 at 319.489 kb on + strand, within GFF1664 at 319.490 kb on - strand, within GFF1664 at 319.490 kb on - strand, within GFF1664 at 319.799 kb on - strand, within GFF1664 at 320.060 kb on - strand at 320.098 kb on + strand at 320.099 kb on - strand at 320.099 kb on - strand at 320.263 kb on - strand, within GFF1665 at 320.263 kb on - strand, within GFF1665 at 320.496 kb on + strand, within GFF1665 at 320.538 kb on + strand, within GFF1665 at 320.538 kb on + strand, within GFF1665 at 320.539 kb on - strand, within GFF1665 at 320.611 kb on - strand, within GFF1665 at 320.700 kb on + strand, within GFF1665 at 320.700 kb on + strand, within GFF1665 at 320.701 kb on - strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.745 kb on + strand, within GFF1665 at 320.746 kb on - strand, within GFF1665 at 320.847 kb on + strand, within GFF1665 at 320.847 kb on + strand, within GFF1665 at 321.004 kb on + strand at 321.005 kb on - strand at 321.042 kb on + strand at 321.145 kb on + strand, within GFF1666 at 321.145 kb on + strand, within GFF1666 at 321.146 kb on - strand, within GFF1666 at 321.277 kb on + strand, within GFF1666 at 321.277 kb on + strand, within GFF1666 at 321.277 kb on + strand, within GFF1666 at 321.325 kb on + strand, within GFF1666 at 321.325 kb on + strand, within GFF1666 at 321.382 kb on + strand, within GFF1666 at 321.382 kb on + strand, within GFF1666 at 321.383 kb on - strand, within GFF1666 at 321.422 kb on - strand, within GFF1666 at 321.426 kb on - strand, within GFF1666 at 321.670 kb on + strand, within GFF1666 at 321.670 kb on + strand, within GFF1666 at 321.682 kb on + strand, within GFF1666 at 321.682 kb on + strand, within GFF1666 at 321.683 kb on - strand, within GFF1666 at 321.886 kb on + strand, within GFF1666 at 321.886 kb on + strand, within GFF1666 at 321.886 kb on + strand, within GFF1666 at 321.887 kb on - strand, within GFF1666 at 321.965 kb on + strand, within GFF1666 at 321.965 kb on + strand, within GFF1666 at 321.966 kb on - strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.967 kb on + strand, within GFF1666 at 321.968 kb on - strand, within GFF1666
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 319,294 + GFF1664 0.11 +1.3 319,370 - GFF1664 0.19 +0.0 319,372 + GFF1664 0.19 -0.8 319,372 + GFF1664 0.19 +0.7 319,372 + GFF1664 0.19 +0.3 319,373 - GFF1664 0.19 -0.7 319,373 - GFF1664 0.19 +0.2 319,373 - GFF1664 0.19 +0.4 319,489 + GFF1664 0.32 -0.0 319,489 + GFF1664 0.32 -0.4 319,490 - GFF1664 0.32 +0.8 319,490 - GFF1664 0.32 +1.0 319,799 - GFF1664 0.65 -0.3 320,060 - -0.0 320,098 + +0.3 320,099 - +0.7 320,099 - -0.9 320,263 - GFF1665 0.16 +1.2 320,263 - GFF1665 0.16 -0.3 320,496 + GFF1665 0.44 -0.9 320,538 + GFF1665 0.49 +1.3 320,538 + GFF1665 0.49 -0.4 320,539 - GFF1665 0.49 -0.3 320,611 - GFF1665 0.57 -0.5 320,700 + GFF1665 0.68 +1.6 320,700 + GFF1665 0.68 -0.8 320,701 - GFF1665 0.68 -0.0 320,745 + GFF1665 0.73 +0.0 320,745 + GFF1665 0.73 -0.6 320,745 + GFF1665 0.73 -0.0 320,745 + GFF1665 0.73 +0.0 320,746 - GFF1665 0.73 -0.1 320,847 + GFF1665 0.85 -0.4 320,847 + GFF1665 0.85 -0.5 321,004 + -0.0 321,005 - -0.3 321,042 + -0.3 321,145 + GFF1666 0.13 +2.3 321,145 + GFF1666 0.13 -1.4 321,146 - GFF1666 0.13 -0.6 321,277 + GFF1666 0.22 +0.3 321,277 + GFF1666 0.22 +0.0 321,277 + GFF1666 0.22 -0.3 321,325 + GFF1666 0.26 -0.1 321,325 + GFF1666 0.26 +0.9 321,382 + GFF1666 0.30 +1.6 321,382 + GFF1666 0.30 -0.6 321,383 - GFF1666 0.30 -1.3 321,422 - GFF1666 0.33 -1.0 321,426 - GFF1666 0.33 -0.9 321,670 + GFF1666 0.51 +0.5 321,670 + GFF1666 0.51 +0.1 321,682 + GFF1666 0.52 -0.1 321,682 + GFF1666 0.52 -0.8 321,683 - GFF1666 0.52 -0.3 321,886 + GFF1666 0.67 -0.1 321,886 + GFF1666 0.67 -0.2 321,886 + GFF1666 0.67 +0.9 321,887 - GFF1666 0.67 +1.0 321,965 + GFF1666 0.73 +1.0 321,965 + GFF1666 0.73 +0.3 321,966 - GFF1666 0.73 -0.5 321,967 + GFF1666 0.73 +0.8 321,967 + GFF1666 0.73 -0.6 321,967 + GFF1666 0.73 -0.6 321,967 + GFF1666 0.73 +0.4 321,967 + GFF1666 0.73 -0.3 321,967 + GFF1666 0.73 -0.8 321,968 - GFF1666 0.73 +1.1
Or see this region's nucleotide sequence