Strain Fitness in Xanthobacter sp. DMC5 around GFF1660

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1659 and GFF1660 are separated by 77 nucleotidesGFF1660 and GFF1661 are separated by 3 nucleotides GFF1659 - Phosphoenolpyruvate-dependent phosphotransferase system, at 312,408 to 314,675 GFF1659 GFF1660 - Peptide chain release factor RF1, at 314,753 to 315,835 GFF1660 GFF1661 - Release factor glutamine methyltransferase, at 315,839 to 316,777 GFF1661 Position (kb) 314 315 316Strain fitness (log2 ratio) -1 0 1at 314.214 kb on + strand, within GFF1659at 314.214 kb on + strand, within GFF1659at 314.752 kb on + strandat 314.752 kb on + strandat 314.752 kb on + strandat 314.752 kb on + strandat 314.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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314,214 + GFF1659 0.80 -0.3
314,214 + GFF1659 0.80 +0.3
314,752 + +0.5
314,752 + +0.0
314,752 + +0.5
314,752 + +0.0
314,752 + +0.3

Or see this region's nucleotide sequence