Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1656 and GFF1657 are separated by 75 nucleotides GFF1657 and GFF1658 are separated by 310 nucleotides GFF1658 and GFF1659 are separated by 95 nucleotides
GFF1656 - NADH pyrophosphatase, at 309,288 to 310,226
GFF1656
GFF1657 - hypothetical protein, at 310,302 to 310,742
GFF1657
GFF1658 - Aspartate kinase, at 311,053 to 312,312
GFF1658
GFF1659 - Phosphoenolpyruvate-dependent phosphotransferase system, at 312,408 to 314,675
GFF1659
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1 at 310.177 kb on + strand at 310.178 kb on - strand at 310.303 kb on + strand at 310.304 kb on - strand at 310.454 kb on + strand, within GFF1657 at 310.454 kb on + strand, within GFF1657 at 310.454 kb on + strand, within GFF1657 at 310.455 kb on - strand, within GFF1657 at 310.455 kb on - strand, within GFF1657 at 310.455 kb on - strand, within GFF1657 at 310.904 kb on + strand at 312.549 kb on + strand at 312.744 kb on + strand, within GFF1659 at 312.744 kb on + strand, within GFF1659 at 312.828 kb on + strand, within GFF1659 at 312.828 kb on + strand, within GFF1659 at 312.828 kb on + strand, within GFF1659 at 312.828 kb on + strand, within GFF1659 at 312.830 kb on + strand, within GFF1659
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 310,177 + -0.5 310,178 - -0.5 310,303 + -0.3 310,304 - +0.3 310,454 + GFF1657 0.34 -1.7 310,454 + GFF1657 0.34 +0.0 310,454 + GFF1657 0.34 -0.4 310,455 - GFF1657 0.35 -0.5 310,455 - GFF1657 0.35 -0.6 310,455 - GFF1657 0.35 -0.7 310,904 + -0.1 312,549 + -1.8 312,744 + GFF1659 0.15 -1.3 312,744 + GFF1659 0.15 +0.1 312,828 + GFF1659 0.19 -1.0 312,828 + GFF1659 0.19 -2.2 312,828 + GFF1659 0.19 +1.3 312,828 + GFF1659 0.19 -1.8 312,830 + GFF1659 0.19 -0.3
Or see this region's nucleotide sequence