Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1655 and GFF1656 overlap by 8 nucleotides GFF1656 and GFF1657 are separated by 75 nucleotides GFF1657 and GFF1658 are separated by 310 nucleotides
GFF1655 - hypothetical protein, at 307,490 to 309,295
GFF1655
GFF1656 - NADH pyrophosphatase, at 309,288 to 310,226
GFF1656
GFF1657 - hypothetical protein, at 310,302 to 310,742
GFF1657
GFF1658 - Aspartate kinase, at 311,053 to 312,312
GFF1658
Position (kb) 309
310
311 Strain fitness (log2 ratio) -1
0
1 at 308.950 kb on - strand, within GFF1655 at 309.162 kb on + strand at 309.524 kb on - strand, within GFF1656 at 309.573 kb on + strand, within GFF1656 at 309.809 kb on + strand, within GFF1656 at 309.809 kb on + strand, within GFF1656 at 309.810 kb on - strand, within GFF1656 at 309.810 kb on - strand, within GFF1656 at 309.810 kb on - strand, within GFF1656 at 310.047 kb on + strand, within GFF1656 at 310.177 kb on + strand at 310.178 kb on - strand at 310.303 kb on + strand at 310.304 kb on - strand at 310.454 kb on + strand, within GFF1657 at 310.454 kb on + strand, within GFF1657 at 310.454 kb on + strand, within GFF1657 at 310.455 kb on - strand, within GFF1657 at 310.455 kb on - strand, within GFF1657 at 310.455 kb on - strand, within GFF1657 at 310.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 308,950 - GFF1655 0.81 +0.7 309,162 + -0.3 309,524 - GFF1656 0.25 -0.3 309,573 + GFF1656 0.30 -0.3 309,809 + GFF1656 0.55 -0.4 309,809 + GFF1656 0.55 -0.6 309,810 - GFF1656 0.56 +0.1 309,810 - GFF1656 0.56 +0.6 309,810 - GFF1656 0.56 +0.5 310,047 + GFF1656 0.81 -0.4 310,177 + -0.5 310,178 - -0.5 310,303 + -0.3 310,304 - +0.3 310,454 + GFF1657 0.34 -1.7 310,454 + GFF1657 0.34 +0.0 310,454 + GFF1657 0.34 -0.4 310,455 - GFF1657 0.35 -0.5 310,455 - GFF1657 0.35 -0.6 310,455 - GFF1657 0.35 -0.7 310,904 + -0.1
Or see this region's nucleotide sequence