Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1644 and GFF1645 overlap by 4 nucleotides GFF1645 and GFF1646 overlap by 4 nucleotides GFF1646 and GFF1647 are separated by 40 nucleotides GFF1647 and GFF1648 are separated by 3 nucleotides
GFF1644 - putative ABC transporter ATP-binding protein YejF, at 295,346 to 296,980
GFF1644
GFF1645 - hypothetical protein, at 296,977 to 297,426
GFF1645
GFF1646 - hypothetical protein, at 297,423 to 297,653
GFF1646
GFF1647 - Inner membrane ABC transporter permease protein YejE, at 297,694 to 298,902
GFF1647
GFF1648 - Inner membrane ABC transporter permease protein YejB, at 298,906 to 300,018
GFF1648
Position (kb) 297
298
299 Strain fitness (log2 ratio) -1
0
1 at 297.227 kb on + strand, within GFF1645 at 297.227 kb on + strand, within GFF1645 at 297.407 kb on + strand at 297.679 kb on + strand at 297.679 kb on + strand at 297.679 kb on + strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.680 kb on - strand at 298.022 kb on + strand, within GFF1647 at 298.223 kb on + strand, within GFF1647 at 299.231 kb on + strand, within GFF1648 at 299.232 kb on - strand, within GFF1648 at 299.679 kb on - strand, within GFF1648
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 297,227 + GFF1645 0.56 -0.6 297,227 + GFF1645 0.56 +0.3 297,407 + -1.0 297,679 + -0.9 297,679 + -1.0 297,679 + -0.0 297,680 - -0.3 297,680 - -0.4 297,680 - +0.5 298,022 + GFF1647 0.27 -0.3 298,223 + GFF1647 0.44 +0.3 299,231 + GFF1648 0.29 +0.3 299,232 - GFF1648 0.29 +0.3 299,679 - GFF1648 0.69 -0.3
Or see this region's nucleotide sequence