Strain Fitness in Xanthobacter sp. DMC5 around GFF1645

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1644 and GFF1645 overlap by 4 nucleotidesGFF1645 and GFF1646 overlap by 4 nucleotidesGFF1646 and GFF1647 are separated by 40 nucleotides GFF1644 - putative ABC transporter ATP-binding protein YejF, at 295,346 to 296,980 GFF1644 GFF1645 - hypothetical protein, at 296,977 to 297,426 GFF1645 GFF1646 - hypothetical protein, at 297,423 to 297,653 GFF1646 GFF1647 - Inner membrane ABC transporter permease protein YejE, at 297,694 to 298,902 GFF1647 Position (kb) 296 297 298Strain fitness (log2 ratio) -1 0 1at 297.227 kb on + strand, within GFF1645at 297.227 kb on + strand, within GFF1645at 297.407 kb on + strandat 297.679 kb on + strandat 297.679 kb on + strandat 297.679 kb on + strandat 297.680 kb on - strandat 297.680 kb on - strandat 297.680 kb on - strandat 298.022 kb on + strand, within GFF1647at 298.223 kb on + strand, within GFF1647

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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297,227 + GFF1645 0.56 -0.6
297,227 + GFF1645 0.56 +0.3
297,407 + -1.0
297,679 + -0.9
297,679 + -1.0
297,679 + -0.0
297,680 - -0.3
297,680 - -0.4
297,680 - +0.5
298,022 + GFF1647 0.27 -0.3
298,223 + GFF1647 0.44 +0.3

Or see this region's nucleotide sequence